Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4445 ATGGAGATGAAGATTCAAACAACTGCTAAAATGACAACATTCAAAGAATATGCTTTTAGTATATCAATTCTTTCATGGTATTTTGTGAGAAATGAGAGTGAAGAAAGTGACAAAACTATTCAAGAAACTCTTTTGAATGGTGATAATGGTAATGGAAATGTTAATCCCTTAGAGTTAAAAGAGACTAAAGGGAGCGACACTGTTACTCCTTTTTCAAATGCTGGAATTTTGAGCCTTCTCACTTTCACTTGGGTGGGACCCCTTATAGCATTTGGCAATAAGAAAACCTTAGACCTTGAGGATATTCCTCAGCTAGATAGTGGAGATAGTGTGGTTGGAGCTTTTCCAACTTTTAGAGATAAACTTGAAGCTGATTGTGGTGCAGTTAATAGAGTAACTACACTTAAGTTGGTTAAGTCATTGTTAATCTCTGTGTGGAAAGAGATTCTTGTCACTGCTTTTCTTGCATTGTTATACACTTTAGCTTCGTATGTTGGTCCTTATCTTATTGATTCTTTTGTTCAATATCTTGATGGAAGAAGGTTATATGAGAATCAAGGCTATGTGTTGGTTTCTGCATTTTTCATTGCAAAGATTGTAGAATGCGTAACACAAATGCATTGGTACTTTAGGTTGAAGCAAATCGGACTTCGATTCCGAGCACTGCTTGTCACTATGATATATAACAAAGCCTTAACACTTTCATGTCAATCAAGACAATGCCACACTTCTGGAGAAATAATCAATTTCATGACTGTTGATGCTGAAAGAATCGGTGTTTTCAGTTGGTACATACATGATTTGTGGTTAGTAGTTTTGCAAGTTACATTGGCGTTGTTCATTTTGTATAAAAATTTGGGGCTTGCTTCCATTTCTGCTTTTGTTACTACTATCATTGTTATGCTGGCAAATGTTCCCCTGGGATCATTACAAGAGAAGTTTCAAAATAAGTTGATGGAGTCAAAGGATACAAGAATGAAGACAACATCTGAAGTTTTAAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACTGAGCTTAGGGATGCCGAACAAGGGTGGTTGAAAAAGTTTCTTTATACTTCAGCCTTGACTACATTTGTCTTTTGGGGTGCACCTACATTGGTATCAGTGGTTACTTTTGGTACTTGTATGCTTATAGGGATCCCACTTGAATCAGGGAAGATTCTTTCAGCACTTGCAACAATCAGGATACTTCAAGAGCCTATTTATCATCTTCCAGATTTTATTTCAATGATAGCACAGACTAAAGTTTCTCTCGATAGGATCTCTTCGTTCCTTCGTCTCGATGACTTGCAATCAGATGTTGTTGAAAAGCTTCCTCCCGGAAGTTCTGATACCGCCATTGAAGTGGTTGATGGGAATTTTTCTTGGGATTTATCTTCAGCTAATCCAACTTTGCAGAACATAAATCTCAGAGTTTTTCAAGGCATGAAGGTTGCTGTTTGTGGTACAGTTGGATCAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCTGGCTTCCTTAAGGTTTGTGGAACAAAGGCTTATGTTGCTCAATCACCATGGATTCAAAGTGGCAAGATAGAGGAGAATATATTGTTTGGTGAACTCATGGTTAGGGAAAGGTATGAGAAGGTACTTGAAGCATGTTCCTTAAAGAAGGATCTGGAAATCTTGTCATTTGGTGATCAGACGGTTATAGGCGAACGTGGGATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGCGCTCTTTACCAAGATGCTGATATCTATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTCAAGGAATGCTTGCTGGGTGTTTTAAGTTCAAAAACAGTTGTTTATGTTACTCATCAAGTGGAGTTCTTACCTACTGCTGACCTTATATTGGTCATGAAAGATGGAAAAATTACTCAAAGTGGAAAGTATGCCAATCTGCTCAACATTGGGACCGATTTTATGGAACTCATCGGCGCACACAGAGACGCTATGTCTACACTTGAATCATTGGATGGAGGAAAAACATCTAATGAAATAAGTATCTTAGAAAAAGCTGTAAATACTGCCGGCATTCACAAAGAGGTAAACAAAGATGAGCAAAATGGTGATAAAGGAGAACCAAAAGGCCAACTTGTTCAAGAAGAAGAAAGGGAGAAAGGTAAAGTTGGATTTTCAGTCTATTGGAAGTATATCACAACTGCATATGGAGGAGCTCTCGTACCGTTCATATTATTGGCTCAGATTCTTTTTCAAGCTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCCATCTCAGCCGACGTGGAGGCACCCGTTGAAGGAACAACTCTTATTGAAGTCTATGTTGGTTTGGCCATTGGAAGTTCTTTATGCATTCTTGTTAGAGCACTGTTACTTGTTACAGTCGGTTATAAGACAGCCACTATTCTCTTCAATAAAATGCACCTGTGCATTTTTCGCGCCCCTATGTCATTTTTTGATTCTACTCCAAGTGGACGAATCCTTAATAGAGCTTCAACCGACCAAAGTGCAGTGGATACAGACATACCGTATCAAATTGGCTCATTTGCTTTCTCCTTGATCCAGCTTATAGGAATTATAATAGTGATGTCTCAAGTTGCATGGCAAGTTTTCATGGTGTTTGTACCCGTGATTGCCATTAGCATTTGGTATCAGCGATATTATTTGCCATCAGCCCGTGAACTATCACGTTTAAGCGGAGTATGCAAAGCACCGATCATTCAACACTTTGCCGAAACAATATCCGGTACTTCAACCATTAGAAGCTTTGATAAACAGTCAAGATTCCATGAAACAAATATGAAACTGACTGATGGGTATTCTCGGCCAAAGTTCAATATCGCGGCTGCTATGGAATGGCTATGCTTTCGTTTAGATATGTTGTCTTCCTTCACATTTGCCTTTTCCTTGATATTCTTGATATCGATTCCACCTGGAATCATAAATCCAGGCATTGCTGGTCTAGCCGTTACCTATGGTCTAAATTTAAACATAATGCAAACTTGGGTGATATGGAATTTTTGCAATCTGGAGAACAAAATTATATCGGTAGAAAGGTTACTTCAGTATACGGCCATTTCTAGTGAGCCGTCCCTTATTTCAGAAGAAGAAAATAGACCAGATCCTTCTTGGCCAGCATATGGCGAGGTTGATATACAAAACTTGCAGGTTCGATATGCTCCACATCTTCCACTCGTGTTGCGTGGTCTGACTTGCTCATTTCGTGGAGGAATGAAAACAGGCATCGTTGGTAGAACAGGTAGTGGCAAATCAACTCTTATACAAACACTTTTCCGAATCGTTGAACCTACTGCTGGGAAAGTTATCATTGACAGCATCAACATATCTACAATTGGACTGCATGATTTGAGGTCTAGACTAAGCATTATTCCGCAGGATCCAACAATGTTTGAGGGGACTGTGAGAAGTAATATTGACCCTCTGGAAGAGTACAATGATGAACAAATATGGGAGGCCTTGGATAAGTGTCAACTGGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTCGACTCTTCAGTTAGCGAGAATGGTGAGAATTGGAGCATGGGTCAGAGGCAGTTGGTTTGCCTAGGTAGGGTTCTACTTAAGAAGAGCAAGATTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAGCAAACTCTTAGACTGCATTTCACTGACTCTACAGTCATTACCATTGCGCATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTACTTCTTAGTCAAGGAATTATTGAGGAGTATGACTCCCCAACAACATTGCTAGAGGATAAGTCATCATCTTTTGCTAAGCTTGTTGCAGAGTATACCATGAGATCCAACTCCAATTTTGAGAAATCTGTTGATCACTGA 4017 0.3913 MEMKIQTTAKMTTFKEYAFSISILSWYFVRNESEESDKTIQETLLNGDNGNGNVNPLELKETKGSDTVTPFSNAGILSLLTFTWVGPLIAFGNKKTLDLEDIPQLDSGDSVVGAFPTFRDKLEADCGAVNRVTTLKLVKSLLISVWKEILVTAFLALLYTLASYVGPYLIDSFVQYLDGRRLYENQGYVLVSAFFIAKIVECVTQMHWYFRLKQIGLRFRALLVTMIYNKALTLSCQSRQCHTSGEIINFMTVDAERIGVFSWYIHDLWLVVLQVTLALFILYKNLGLASISAFVTTIIVMLANVPLGSLQEKFQNKLMESKDTRMKTTSEVLRNMRILKLQGWEMKFLSKITELRDAEQGWLKKFLYTSALTTFVFWGAPTLVSVVTFGTCMLIGIPLESGKILSALATIRILQEPIYHLPDFISMIAQTKVSLDRISSFLRLDDLQSDVVEKLPPGSSDTAIEVVDGNFSWDLSSANPTLQNINLRVFQGMKVAVCGTVGSGKSTLLSCVLGEVPKISGFLKVCGTKAYVAQSPWIQSGKIEENILFGELMVRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGVLSSKTVVYVTHQVEFLPTADLILVMKDGKITQSGKYANLLNIGTDFMELIGAHRDAMSTLESLDGGKTSNEISILEKAVNTAGIHKEVNKDEQNGDKGEPKGQLVQEEEREKGKVGFSVYWKYITTAYGGALVPFILLAQILFQALQIGSNYWMAWATPISADVEAPVEGTTLIEVYVGLAIGSSLCILVRALLLVTVGYKTATILFNKMHLCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQIGSFAFSLIQLIGIIIVMSQVAWQVFMVFVPVIAISIWYQRYYLPSARELSRLSGVCKAPIIQHFAETISGTSTIRSFDKQSRFHETNMKLTDGYSRPKFNIAAAMEWLCFRLDMLSSFTFAFSLIFLISIPPGIINPGIAGLAVTYGLNLNIMQTWVIWNFCNLENKIISVERLLQYTAISSEPSLISEEENRPDPSWPAYGEVDIQNLQVRYAPHLPLVLRGLTCSFRGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGKVIIDSINISTIGLHDLRSRLSIIPQDPTMFEGTVRSNIDPLEEYNDEQIWEALDKCQLGDEVRKKEGKLDSSVSENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLRLHFTDSTVITIAHRITSVLDSDMVLLLSQGIIEEYDSPTTLLEDKSSSFAKLVAEYTMRSNSNFEKSVDH* 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4445 1338 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1088 1322 IPR003439 GO:0005524
Tpr4g4445 1338 CDD ABC_6TM_ABCC_D2 768 1062 IPR044726 GO:0140359
Tpr4g4445 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 686 IPR027417 -
Tpr4g4445 1338 CDD ABCC_MRP_domain1 464 664 - -
Tpr4g4445 1338 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 27 1334 - -
Tpr4g4445 1338 SMART AAA_5 491 664 IPR003593 -
Tpr4g4445 1338 SMART AAA_5 1114 1306 IPR003593 -
Tpr4g4445 1338 Pfam ABC transporter 1106 1253 IPR003439 GO:0005524
Tpr4g4445 1338 Pfam ABC transporter 482 616 IPR003439 GO:0005524
Tpr4g4445 1338 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 27 1334 - -
Tpr4g4445 1338 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 464 687 IPR003439 GO:0005524
Tpr4g4445 1338 Gene3D - 446 703 IPR027417 -
Tpr4g4445 1338 SUPERFAMILY ABC transporter transmembrane region 139 443 IPR036640 GO:0005524|GO:0016021
Tpr4g4445 1338 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 770 1050 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g4445 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1080 1317 IPR027417 -
Tpr4g4445 1338 CDD ABCC_MRP_domain2 1086 1306 - -
Tpr4g4445 1338 CDD ABC_6TM_ABCC_D1 151 438 IPR044746 GO:0140359
Tpr4g4445 1338 Gene3D - 1070 1324 IPR027417 -
Tpr4g4445 1338 ProSitePatterns ABC transporters family signature. 589 603 IPR017871 GO:0005524
Tpr4g4445 1338 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 150 430 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g4445 1338 Pfam ABC transporter transmembrane region 770 1012 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g4445 1338 Pfam ABC transporter transmembrane region 151 416 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g4445 1338 SUPERFAMILY ABC transporter transmembrane region 768 1068 IPR036640 GO:0005524|GO:0016021
Tpr4g4445 1338 MobiDBLite consensus disorder prediction 721 744 - -
Tpr4g4445 1338 Gene3D ABC transporter type 1, transmembrane domain 128 445 IPR036640 GO:0005524|GO:0016021
Tpr4g4445 1338 Gene3D ABC transporter type 1, transmembrane domain 731 1068 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4445 Tpr-Chr4 52183956 52191184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4445 422 704 Calmodulin-binding Proteins AT2G36910 28.477 7.24e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4445 - K05666 gmx:100818714 2206.02