Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4442 ATGGTTAAGCATAATAATGTGATCCCTAATGCGCACTTTAGGAAGGATTGGCAAAACTATGTCAAGACGTGGTTCAATCAGCCTGCTCGCAAGACAAGAAGACGGTTAGCTCGCCAGAAGAAGGCCGTTAAGATTTTCCCTAAGCCTACTGCTGGACCTCTTAGACCTGTTGTTCATGGTCAGACAGTGAAATACAACATGAAACTCAGAGCTGGGAAAGGGTTTTCTCTCGAAGAGTTGAAGGCTGCTAATATTCCAAAAAAGCTTGCTCCAACTATTGGCATTGCTGTTGATCATCGCCGCAAAAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGAGGTTGAAAACATATAAGGCCAAATTAGTTGTGTTCCCAAGGCGGGACCGTAAGGTCAAGGCTGGTGATTCTAGTCCCGAGGAACGCGCAAATGCCACACAAGTTCAGGGTCCATTCTTGCCCATTGTGAGGGAACAGCCATCTGTCGAACTTGTTAAGATTACTGATGAAATGAAGGCATTCAAAGCATATTATAAGCTTCGTCTTGAACGCACTAATCAACGCCATTTTGGTGCCCGACTAAAGAGAGCTGCTGAAGCAGAAAAGGAAGACAAAAAATAG 624 0.4455 MVKHNNVIPNAHFRKDWQNYVKTWFNQPARKTRRRLARQKKAVKIFPKPTAGPLRPVVHGQTVKYNMKLRAGKGFSLEELKAANIPKKLAPTIGIAVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRDRKVKAGDSSPEERANATQVQGPFLPIVREQPSVELVKITDEMKAFKAYYKLRLERTNQRHFGARLKRAAEAEKEDKK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4442 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Tpr4g4442 207 Gene3D - 167 207 - -
Tpr4g4442 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
Tpr4g4442 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Tpr4g4442 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4442 Tpr-Chr4 52091564 52093855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4442 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 83.246 1.67e-120 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4442 K02873 - gmx:100805957 365.54