Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4441 ATGGCTGAGATTGACAATGGTGATAATCAACCTTTGTTCAGTAGCAAATTTGGTGTGATACTAATTGCCATGGGTTCAGCTAGTTTTGTGGTAACAATGTATCATCTCATAGTCATTTGCTGCCAAAACTCAGCCGAACAAGCGCGGCAAAACGAGCAACCGGCAACACAAACACCGAGCGTCGAAGAGGGTTGTCTGTCGCATCAAATTCCATCTCACAAGTATGAGAAGAAGAAAAAGAATGATGAAAATGATGAAGATGATTGTGTGACTTGTGCTGTGTGCTTGGGAGATTTTGAGGAGGGTGAGGAGTTAAGAACTATGCCTTCTTGCATGCATTTTTTCCATGTACCATGCATAGATATGTGGCTCATTTCACATTTTAATTGTCCTGTTTGTCGCGCTGATGCCACGCCCTCCCCGGTGGTGCCTCACAGTTTACCGGAGGTTGCATCCAACGAGATGAATGTTGATCAAGGCATTAATATGGTGCAAATAGTTGTCGTCCAAAATGAGTTGCAAAGTGGGTTACCAATAGTCCCATCCTAA 549 0.4353 MAEIDNGDNQPLFSSKFGVILIAMGSASFVVTMYHLIVICCQNSAEQARQNEQPATQTPSVEEGCLSHQIPSHKYEKKKKNDENDEDDCVTCAVCLGDFEEGEELRTMPSCMHFFHVPCIDMWLISHFNCPVCRADATPSPVVPHSLPEVASNEMNVDQGINMVQIVVVQNELQSGLPIVPS* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4441 182 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 5 154 - -
Tpr4g4441 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 141 IPR013083 -
Tpr4g4441 182 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Tpr4g4441 182 SUPERFAMILY RING/U-box 74 140 - -
Tpr4g4441 182 SMART ring_2 92 133 IPR001841 -
Tpr4g4441 182 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 154 IPR044675 -
Tpr4g4441 182 Pfam Ring finger domain 91 134 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4441 Tpr-Chr4 52089349 52090075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4441 6 138 C3H Transcription Factor Family AT1G04360 29.530 8.40e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4441 - - lja:Lj0g3v0111029.1 181.8