Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4436 ATGATTTATGGTAGGTGTGCAGCTTGCAAGAGTCAAAGAAGAAGGTGTCCTTCAGATTGCATATTCTCTCCTTATTTCCCTCCCAATGATCCTCAAAGATTTGCTTATGTTCACAAAATCTATGGTGGTAGCAATGTTGGAAAAATGCTTCAGCAATTACCTGAATATTTACGAGAACAAGCTGTAAATACTTTGTATTTAGAAGCACAAAGTAGGATTCAAGATCCAGTTTATGGATGTGTTGGGATTGTCTCAAAATTGTATCAACAAATCCATGATACAGAAGCTGAACTGGCCAAAATCCAAACTCAAATTGCTTGTCATAAGCTCCAAAATCAACAATTTGAAGTTGAATCAAATTTCAATGTCTTGTCCACAGTTGATGCTGAATCAAAATTGAACTTCTTGCCAACACAAAGTAATAGCATGGAGCAGATTCAGTGGCCTAATCATGTTCCTAATTTGTTCAATTAA 474 0.3586 MIYGRCAACKSQRRRCPSDCIFSPYFPPNDPQRFAYVHKIYGGSNVGKMLQQLPEYLREQAVNTLYLEAQSRIQDPVYGCVGIVSKLYQQIHDTEAELAKIQTQIACHKLQNQQFEVESNFNVLSTVDAESKLNFLPTQSNSMEQIQWPNHVPNLFN* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4436 157 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Tpr4g4436 157 Coils Coil 84 111 - -
Tpr4g4436 157 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Tpr4g4436 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 116 - -
Tpr4g4436 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4436 Tpr-Chr4 52048205 52049203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4436 5 106 AS2 family AT3G26660 65.686 1.09e-47 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr4g4436 LOB 4.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4436 - - lang:109328513 233.417