Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4434 ATGGAGAGTTCAATTATCATTCAATGGTTAAACACTCTTCTACTATGTACACTCCTGTTACTTAAGACACAAGGACAGTTTGTTCCAATAACTCTGCTCGAAAGCGCGGTATCAAAAGGAGCTGTGTGTTTGGATGGAAGCCCTCCAGCTTATCATTTTGATAAAGGACATGAAGAAGGAGTTAACAACTGGATTGTTCACATTGAGGGAGGTGGATGGTGTCACAATGTCACATACTGCCTATATCGTAAGGACAGTCGATTAGGTTCGTCGAACCAAATGGAACAGCAAACTTACTTTTCTGGATATTTAAGTGATAACCAACAATATAATCCAGATTTCTACAATTGGAATAGAGTAAAGGTTAGGTACTGTGATGGATCATCATTTACTGGTGATGTTGAAGAAGTTGATCCAGAGACAAATTTGCACTACAGAGGACAAAGAATTTTTAATGCTGTAATGGAAGAGTTACTAGCAAAAGGAATGGATCATGCTGAAAATGCTATTCTTTCTGGATGTTCTGCTGGAGGATTAACTGCTATATTACACTGTGATGGATTTAGAGAACTATTACCTAATGGAACTAAAGTGAAATGTGTCTCAGATGCTGGTTATTTTGTTAATGTAAAGGATATCTCAGGAGATTATTATATTGAAGATTATTACAGTCAAGTTGTTGAAATACATGGCTCAGAGAAGAATTTGCCTCAATCCTGCACTTCAAAACTCAGTCCAGGACTCTGCTTTTTTCCTCAATATATGGCATCAAGTATCAGAACACCACTCTTCATTGTAAATGCAGCATATGACTCATGGCAGATTAAGAATATTTTGGCACCTGGTGACGCTGATCCGAATGGCCAATGGAGTAGCTGTAAGACTAATCTAAACAACTGCTCACCTGAACAACTAAATATAATGCAAGACTATAGGTCACAATTCTTGAAGGCATTAGGTCCTGTAAGCAACTCTAAATCTAATGGAATGTTCATAGACTCTTGCTATGTTCACTGCCAAACAGAACCACAGGATACATGGTTTACAAGGGATTCTCCAATGGTTGACAATAAAACAGTTGCAAAGGCAGTAGGAGACTGGTTTTATGAAAGAAGTCCTTCCCGTGAGATAGATTGTACTTACCCTTGTAACCCTACTTGTCAGAACCGTGTTTTGGATGTTGCAGCTTATCCAGGAATACACTAG 1206 0.3839 MESSIIIQWLNTLLLCTLLLLKTQGQFVPITLLESAVSKGAVCLDGSPPAYHFDKGHEEGVNNWIVHIEGGGWCHNVTYCLYRKDSRLGSSNQMEQQTYFSGYLSDNQQYNPDFYNWNRVKVRYCDGSSFTGDVEEVDPETNLHYRGQRIFNAVMEELLAKGMDHAENAILSGCSAGGLTAILHCDGFRELLPNGTKVKCVSDAGYFVNVKDISGDYYIEDYYSQVVEIHGSEKNLPQSCTSKLSPGLCFFPQYMASSIRTPLFIVNAAYDSWQIKNILAPGDADPNGQWSSCKTNLNNCSPEQLNIMQDYRSQFLKALGPVSNSKSNGMFIDSCYVHCQTEPQDTWFTRDSPMVDNKTVAKAVGDWFYERSPSREIDCTYPCNPTCQNRVLDVAAYPGIH* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4434 401 PANTHER PECTIN ACETYLESTERASE 6 394 - -
Tpr4g4434 401 Pfam Pectinacetylesterase 22 372 IPR004963 GO:0016787
Tpr4g4434 401 PANTHER NOTUM-RELATED 6 394 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4434 Tpr-Chr4 52022961 52027401 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4434 8 400 Carbohydrate Esterase AT4G19420 57.243 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4434 K19882 - gmx:100780707 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4434 4 52022961 52027401 Tpr4g4434 4 52022961 52027401 ECH
Tpr2g1328 2 15533379 15543163 Tpr4g4434 4 52022961 52027401 PCT