Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4433 ATGGGATCCAATACTAGCAAAGCCACTTCTACTACTACTACTTCTTCTTCTTCTTCAAGGAATTTCAAGAAGAGTTGTTCTAAGGGATTTAGAGGGTTTCAATCATATTGTCTTGGAACTTGTTCTGGATCTCAAGATAGTGATAATGAAGACAAGGTTTGTGATCAGAATAAAGTAAATGGCAGTGATGTTACATATGCTGATGACAATCTATCTGAGTCTTTTGGAAAGGTTAAAGCTGGTGATAGTGACACTACTTGTATGCCTAACATCAACCTTGATGAGTGTAGTGAAACAAGAATCCCCGACAACACTTTGTCCAGAAGTCGTACCAGTTCTGTTCATGCTTCTTCAACTCATTCGTTGAATTCTACTAGTCGATTCCTTTCTCGGTTTGGCATCAGTCCCGGTAATAAAACCTTCAGACTTAGCAGATTTGTTGGTTCGAGGTCATCAAGGCCTTGTCCTGTTTCTTCTACAAGTCTCTCAGAATTTGACAATGGTGCTGAGCATAATCTACGTCCAGGACCTTGTAGCAGTTTGTTTAACAGAAATGAAACACCTCGGTGTAATGAAGATATTCCTAATAATTTAAGGTCAAATGTGTCAGGATCGGGTTTGCCTTGCAACATTCAGAGCAATCTCAGTGGTAGCATTGGTGCAAGAGATGAGTTGGATGTAAACTTATTTTCTTCGAGAATTCGAGCGGAGACAGAACAAATTGAGACTAGACATGTAGATCGACGAAACGGTGCTCGGGAACCAGTTGAGCAAAATGTTCGATTTAGTCGAACTTTAAGTGTTGGGAGGCTTCGTGACAGAGTTCTTCGTCGATCAACATTATCTGACCTTACCTTATTCCCTTTACAACAAGAGAGAGAACTGAGAGATGATAGTCAGAATACTCAAAGGCAAGCAGTGGAGGCAGATTCAAGAGTGTCACCATTGGATCATAGCGATGTTAGTTCTTCTACATCTAGATATCCTCCATCTAGTATGTCTAACTCCATGTTTAGCAATCAAAACAATGACGTTGAGACCTCGCGATTGCGAGAAGGTAGGTATCAGGATCTACTAGAGCATAGGTCCAATTTCCTTGAACGGAGAAGACAAATACGGTCACAGGTCCGTTCTCTTCGGCGGTTGGGTAGCCGCTATGAAAATCAATCGGCACATGAGAGATCATGTATCTTGTCTGGTCAACATAGAAGTGCTCGTTGTATGTGCCGATTAAGAAATCGTGACACTAGTTCAAATGATGATACCGGTGCTAGAGCTAGCATATCAAGAATTGTTGTACTTGCGGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCCCATCCATCTGTATCTTCTATTGGATCCGTTCCCGCACCTATCAATGTTGTGGAATCATTGCCTGTCAAGTTATATGAGAAGTTGCATAAAGAAGATACTACACAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCGTGCGAGTTCTGCCTTGTCATCATGAATTTCATAGAACATGTATAGACAAGTGGTTGAAGGAGATTCACAGGGTATGCCCGCTATGTCGGGGGAACATCTGCATTTCTGGCTCACCGCTGACTCGGAACTCTAGCGGCTAG 1647 0.4196 MGSNTSKATSTTTTSSSSSRNFKKSCSKGFRGFQSYCLGTCSGSQDSDNEDKVCDQNKVNGSDVTYADDNLSESFGKVKAGDSDTTCMPNINLDECSETRIPDNTLSRSRTSSVHASSTHSLNSTSRFLSRFGISPGNKTFRLSRFVGSRSSRPCPVSSTSLSEFDNGAEHNLRPGPCSSLFNRNETPRCNEDIPNNLRSNVSGSGLPCNIQSNLSGSIGARDELDVNLFSSRIRAETEQIETRHVDRRNGAREPVEQNVRFSRTLSVGRLRDRVLRRSTLSDLTLFPLQQERELRDDSQNTQRQAVEADSRVSPLDHSDVSSSTSRYPPSSMSNSMFSNQNNDVETSRLREGRYQDLLEHRSNFLERRRQIRSQVRSLRRLGSRYENQSAHERSCILSGQHRSARCMCRLRNRDTSSNDDTGARASISRIVVLAEALFEVLDEIHQQSVVLSSHPSVSSIGSVPAPINVVESLPVKLYEKLHKEDTTQCYICLVEYEDGDSVRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGNICISGSPLTRNSSG* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4433 548 MobiDBLite consensus disorder prediction 316 346 - -
Tpr4g4433 548 SMART ring_2 490 531 IPR001841 -
Tpr4g4433 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 456 536 IPR013083 -
Tpr4g4433 548 SUPERFAMILY RING/U-box 470 537 - -
Tpr4g4433 548 MobiDBLite consensus disorder prediction 294 349 - -
Tpr4g4433 548 Pfam Ring finger domain 489 532 IPR001841 -
Tpr4g4433 548 ProSiteProfiles Zinc finger RING-type profile. 490 532 IPR001841 -
Tpr4g4433 548 MobiDBLite consensus disorder prediction 1 22 - -
Tpr4g4433 548 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 547 - -
Tpr4g4433 548 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 547 - -
Tpr4g4433 548 CDD RING-H2_PA-TM-RING 489 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4433 Tpr-Chr4 52017458 52021747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4433 246 536 C3H Transcription Factor Family AT5G45290 61.745 2.73e-110 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4433 - - cam:101492704 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4433 4 52017458 52021747 Tpr4g4433 4 52017458 52021747 ECH
Tpr2g1327 2 15525829 15530226 Tpr4g4433 4 52017458 52021747 PCT