Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4416 ATGAAAGATTTAGAGGTCAGTATGATATCTGAAGAAACAAATGGTGTTAGTGATTGGCACTTGGAGCTTCTTAACGATTATGCTTCTATAGTTGAAGATGATGAATATTTACTTCAAGACCCTCAACATGAACCCTTGACTGATCAAGTCAATAATATTGATGAGTGTTTTCCATTTGAAGGGCAAATATTTAACAGTGATTATGAAGCTTATGAATTTTATCGTTTATTTGCACGAAAAAATCGATTTTCAATTAGGCGTGATCACATTTACAAATCTGTTAAACACGAGTCTGAGATGAATCCATCGGGTATTTATAAAAGGGAATTTGTTTGTCATCGTGGTGGTATTGTTAAACACCGCAAAACTAATGAAGTGGACTGCCAAAGAAACCGAAAATCTTCAAGATGTAATTGTAGTGCAAAGATGCTGGTTGCTATCAGTACAATTGGCGTCGAGGAAAAATGGGTGGTTAAGTATTTCAACAATGATCACAACCATGAGTTATTGGATGACAAAGAGGTTCAATTTCTTCCTGCCTATCGTAGCATCCCAATTGTTGATCAAAGTCGTATAATGTTGTTGTCGAAAGCCGGTTGCTCTATAAGTCTTATCATGAGAGTGCTTGAATTAGAGAAAGAAATATGTACAGGCAATCTACCATTTCTAGAGAAGGATATTAGAAATTTTATTCAATCTCAGAGTGGTATTGGTAAAGAAAGTGATGCTTCAGATGTTCTTAAATTGTGCAAAAGTTTGAAAGATATAGATGACGCATTCAAATATGAATTTACAATTGATGAAAGTAACAAATTGGAGCATATTATTTGGGCATTTGGTGATTCAATTCGAGCATATGAAGCTTTCGGAGATGTTGTAGTTTTTGATACCACATATAGAATAAATCGTTATGATATGCCACTTGGGATATGGGTTGGTGTTGATAACCATGGAAATACAATTTTCTTTGGTTGTACTTTCCTAGCTTTTGTTGAAGGAAAATATCCAAAAACTATTCTTACGGATCAAGATCCCGCACTTAAAGAAGCCATTGCAATGGAATTGCCAAATACGAAACATGCATTTTGCATATGGCATATTGTAGCAAAGTTGTCAAGTTGGTTTTCTTTTCCTCTAGGTTCGAGATATAACGACTTTAAACATGAGTTTCATAAGGTGTATCATTTAGAATGTGCGGATGATTTTGAACGAGAATGGAACTTAATGGTTGCTCGGTTTGGTCTAACTTATTTGAAAGACTTTTTTTTTGCCGGGATGACGACAACAGGACGCTCAGAATCAATAAACTCGTATATTAAAAGATTCTTAGATGTTGGTGTTGCAGTCAAAATTAGAAATCAAGCTGGAGAAGAGGCAAGAATGCGTCAAAAGTATCACAATCTTGAAATTAGAACATGTTTTCCTATTGAGGAACATGCTGCATCTATTCTCACACCATATGCCTTTGGGTTGCTGCAACATGAGATTGAATTAGCTACAAAATATGCAGCAACTGAAACTGATAATGGCAATTATATTGTGCAACATCATACCAAAGTTGATGGTGGTCGTCTAGTAAGTTGGACAGTAGAAGAAGAGTTAATTAATTGCTCTTGCAAAGAATTTCAGTTTTCAGGAATATTGTGCAGACATGCTATTCGAGTGTTAATGGTGAAAAATTATTTTTCCCTTCCGTCAAAGTATCTTCCTTTTCGATGGAGACGAGAAAGTTCATTGATCCCAAATTCTAGTCATGTAGTCAACAACAATAGTGGCTCATCTGGAAAGTTTCAATCTCTAATTCAATGTTTGTTAGTTGAATCCTTAAAGACAAAAGAACGAGAGCAAGTAGCAGCCACAAAACTAGAAAAAGTCATCCGAGAGCTAAAAAGTATGCCTGAAAATCAAGAACATGAGATGCATTTGGAACCTGATGTTCCAAATCATGATGGTTGTGATGTTGAAAATCCCATTCCCTCAAAATCCAAAGGTCGGCCAAAAGGATCAAGACCAAAAGGAGGAGTTGAAGTTGCAAAGAAGCCACGTCGTTGCCATGTTCCAAATTGTGGTGAATTTAATCACGACACACGAAATTGTCCAAACAAAAAGAAAAATCTCGAATTGCCTTCTCAATCTCCTAATAAGTAA 2148 0.3575 MKDLEVSMISEETNGVSDWHLELLNDYASIVEDDEYLLQDPQHEPLTDQVNNIDECFPFEGQIFNSDYEAYEFYRLFARKNRFSIRRDHIYKSVKHESEMNPSGIYKREFVCHRGGIVKHRKTNEVDCQRNRKSSRCNCSAKMLVAISTIGVEEKWVVKYFNNDHNHELLDDKEVQFLPAYRSIPIVDQSRIMLLSKAGCSISLIMRVLELEKEICTGNLPFLEKDIRNFIQSQSGIGKESDASDVLKLCKSLKDIDDAFKYEFTIDESNKLEHIIWAFGDSIRAYEAFGDVVVFDTTYRINRYDMPLGIWVGVDNHGNTIFFGCTFLAFVEGKYPKTILTDQDPALKEAIAMELPNTKHAFCIWHIVAKLSSWFSFPLGSRYNDFKHEFHKVYHLECADDFEREWNLMVARFGLTYLKDFFFAGMTTTGRSESINSYIKRFLDVGVAVKIRNQAGEEARMRQKYHNLEIRTCFPIEEHAASILTPYAFGLLQHEIELATKYAATETDNGNYIVQHHTKVDGGRLVSWTVEEELINCSCKEFQFSGILCRHAIRVLMVKNYFSLPSKYLPFRWRRESSLIPNSSHVVNNNSGSSGKFQSLIQCLLVESLKTKEREQVAATKLEKVIRELKSMPENQEHEMHLEPDVPNHDGCDVENPIPSKSKGRPKGSRPKGGVEVAKKPRRCHVPNCGEFNHDTRNCPNKKKNLELPSQSPNK* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4416 715 SMART 26again6 535 562 IPR006564 GO:0008270
Tpr4g4416 715 MobiDBLite consensus disorder prediction 655 715 - -
Tpr4g4416 715 MobiDBLite consensus disorder prediction 669 702 - -
Tpr4g4416 715 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 57 637 - -
Tpr4g4416 715 ProSiteProfiles Zinc finger SWIM-type profile. 528 560 IPR007527 GO:0008270
Tpr4g4416 715 Pfam SWIM zinc finger 520 558 IPR007527 GO:0008270
Tpr4g4416 715 Pfam FAR1 DNA-binding domain 72 170 IPR004330 -
Tpr4g4416 715 Pfam MULE transposase domain 331 369 IPR018289 -
Tpr4g4416 715 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 57 637 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4416 Tpr-Chr4 51588285 51590740 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr4g4416 FAR1 1.1e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4416 - - var:108339217 854.744