Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4408 ATGAACCTTCCTACTGATTCAGAACAACCACCACCACCAGATTCCGCCACCGTCAACGGCACATCAACATCAGACCAAAATCCCGAACCACCATCGGAACTCCAACTCCCAATATCTTGGCCACAAGACGGAAAGTTAACCATAGAATGGATCCAAAATCTAACACTCTGTTTCGATTGGTCTTCCAAAAACCTACCTCCTTCCGAATTCCCTTCTGTTCTTCCCGTTCATGTCTTCGATTCTCTCATTCTCATCGCTTCCAAGATGCTTCACAAGGAACCTAATTGCGTTCCTATACAACCTTTTCGTCCTGAACCTGATTCTGATTCTGAATCTTCTTCCTCCGCTGCATCTGTTGTTGTTGTTGGTGATGTTCATGGACAATTGCATGATCTCCTTTTTCTTCTTCGTGATGCTGGTTATCCTTCAAAAGATCGAATCTTTGTTTTTAATGGTGATTATGTTGATCGTGGAGCTTGGGGACTTGAAACTTTCTTGCTCTTGTTGGCTTGGAAGGTATTCATGCCAGAAAACATATATTTATTAAGAGGGAATCATGAATCGAAATATTGCACTTCTGTTTATGGTTTTGAAAAAGAAGTTATGGTAAAGTATAGTGACAAAGGCAAACACGTATACCGGAAATGTTTAGGATGCTTTGAAGGTCTACCTTTGGCTTCTATTATAGCAGGGTGTGTATACACAGCTCACGGAGGACTTTTCCGTAGTGTAACTGTGACGCCTTCAAAGAGATTAAAAGGAAAGAAGAATCGTAAGATTAATGTTACTACCGACAGCAAAAATATATCGCTTGGTTCCTTGGAAGAGTTGTCCAAGGCTCGACGTTCAGTGCTTGATCCTCCTTGGGAAGGACAAAATTTGATTCCTGGTGATGTTTTGTGGTCTGATCCTTCAAAAACGCCTGGCCTTTCTCCAAACAAAGAGAGAGGCATTGGCTTGGTTTGGGGTCCTGATGTTACTGAAGCATTTTTAAAGAAGTACCAATTTAAGTTGATCATCAGGTCACATGAAGGTCCTGATGCTAGGGAGAAAAGGGATGGTTTTGAGGGAATGGATGAAGGTTACACTATTGATCATATTGTGGAATCCGGAAAGCTGGTCACCGTGTTTAGTGCTCCAGATTACCCACAATTTCAGGCAACAGAGGAGAGGTATAACAACAAAGGTGCATATGTTGTCCTTGAGCCCCCGAATTTCGACAATCCTATATTTCATGGATTTTTGGCTGTTACTCCAAGGCCAAAGGCGAATCCTTACTATGATTTTGAAGACGTGTTAGACTCCGACGAAGAATTGGACTTGGCCTCCATGGTAACTACCTGA 1344 0.4219 MNLPTDSEQPPPPDSATVNGTSTSDQNPEPPSELQLPISWPQDGKLTIEWIQNLTLCFDWSSKNLPPSEFPSVLPVHVFDSLILIASKMLHKEPNCVPIQPFRPEPDSDSESSSSAASVVVVGDVHGQLHDLLFLLRDAGYPSKDRIFVFNGDYVDRGAWGLETFLLLLAWKVFMPENIYLLRGNHESKYCTSVYGFEKEVMVKYSDKGKHVYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSVTVTPSKRLKGKKNRKINVTTDSKNISLGSLEELSKARRSVLDPPWEGQNLIPGDVLWSDPSKTPGLSPNKERGIGLVWGPDVTEAFLKKYQFKLIIRSHEGPDAREKRDGFEGMDEGYTIDHIVESGKLVTVFSAPDYPQFQATEERYNNKGAYVVLEPPNFDNPIFHGFLAVTPRPKANPYYDFEDVLDSDEELDLASMVTT* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4408 447 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 7 20 444 - -
Tpr4g4408 447 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 20 444 - -
Tpr4g4408 447 MobiDBLite consensus disorder prediction 12 33 - -
Tpr4g4408 447 Gene3D - 69 432 IPR029052 -
Tpr4g4408 447 MobiDBLite consensus disorder prediction 1 33 - -
Tpr4g4408 447 SUPERFAMILY Metallo-dependent phosphatases 71 417 IPR029052 -
Tpr4g4408 447 Pfam Calcineurin-like phosphoesterase 118 346 IPR004843 GO:0016787
Tpr4g4408 447 ProSitePatterns Serine/threonine specific protein phosphatases signature. 182 187 IPR006186 GO:0016787
Tpr4g4408 447 PRINTS Serine/threonine phosphatase family signature 118 145 IPR006186 GO:0016787
Tpr4g4408 447 PRINTS Serine/threonine phosphatase family signature 148 175 IPR006186 GO:0016787
Tpr4g4408 447 PRINTS Serine/threonine phosphatase family signature 181 205 IPR006186 GO:0016787
Tpr4g4408 447 PRINTS Serine/threonine phosphatase family signature 218 244 IPR006186 GO:0016787
Tpr4g4408 447 PRINTS Serine/threonine phosphatase family signature 278 305 IPR006186 GO:0016787
Tpr4g4408 447 PRINTS Serine/threonine phosphatase family signature 372 388 IPR006186 GO:0016787
Tpr4g4408 447 SMART pp2a_7 74 421 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4408 Tpr-Chr4 51470741 51475548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4408 30 338 Calmodulin-binding Proteins AT5G63870 67.419 2.20e-152 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4408 K04460 - gmx:100802851 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4408 4 51470741 51475548 Tpr4g4408 4 51470741 51475548 ECH