Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4398 ATGACTCGCACACTTAGAACATTACAATCTATTTCCTCCGACGCACCACCGCCGGAGTCCGCCGCTTCATTAGAATCCGACTTTGTCGTCATCCTAGCCGCACTCCTCTGCGCTCTAATATCCGTCGTGGGTCTAACCGCCATCGCCCGTTGCGCCTGGCTCCGCCGTGGTCCGGTCGCCGGAGCATCGCCGGCGACGGCGGTTGTCAACAAAGGTCTCAAAAAGAAGGTTCTCAATTCACTTCCAAAATTCACTTACAGTGACGGAAGTCCCGGAAAATGGGTAGTCTCGTCGGAATGCGCCATTTGTCTCTCGGAGTTTACCGCCGGTGAAGAGGTTCGGGTACTTCCACAGTGTGGTCATGGTTTCCATGTGGCATGTGTTGACACGTGGCTTGGGTCTCACTCTTCTTGTCCTTCTTGCCGTGCTCCTTTTGCTGTTGCTAGGTGCCAGAAATGTGGCCTTTATCAGCCTACACCTGCCGGAGATGTCGCCGGTGAAACGGAGTCGAAGTCCGGCGGCGGAGAAAATGGTGAAGTTGTTGTTAATGTTAATTGTGTTGGTGAGAATGTTGATAGGCATAGCCACGGTGTTTATAATGGCTTCTTGCCATAA 615 0.5268 MTRTLRTLQSISSDAPPPESAASLESDFVVILAALLCALISVVGLTAIARCAWLRRGPVAGASPATAVVNKGLKKKVLNSLPKFTYSDGSPGKWVVSSECAICLSEFTAGEEVRVLPQCGHGFHVACVDTWLGSHSSCPSCRAPFAVARCQKCGLYQPTPAGDVAGETESKSGGGENGEVVVNVNCVGENVDRHSHGVYNGFLP* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4398 204 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 186 - -
Tpr4g4398 204 SUPERFAMILY RING/U-box 78 147 - -
Tpr4g4398 204 Pfam Ring finger domain 99 142 IPR001841 -
Tpr4g4398 204 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 186 - -
Tpr4g4398 204 SMART ring_2 100 141 IPR001841 -
Tpr4g4398 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Tpr4g4398 204 CDD RING-H2_PA-TM-RING 99 142 - -
Tpr4g4398 204 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4398 Tpr-Chr4 51362086 51363116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4398 1 153 C3H Transcription Factor Family AT1G20823 60.241 5.19e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4398 - - cam:101497131 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1225 2 14318208 14319504 Tpr4g4398 4 51362086 51363116 PCT