Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4385 ATGCCGAAGGCTAAAGCTGATTCCAAACCCGCTGAGAGCAGGTTGAAGCGTAAGGGTGCTGGAGCTGGAAGGAAACAGACGAAGAAAGCCGCTAAGGATCCTAACAAGCCGAAGAGGCCACCGAGTGCTTTCTTCGTTTTCATGTCTGACTTCAGAGAACAGTATAAGAAGGATCATCCAAATAACAAATCCGTTGCCACTGTCGGAAAAGCTTGCGGTGAAAAATGGCAATCGTTGTCTGAAGAAGAGAAAGCTCCCTATGTTGCAAGGGCATTGAAGAAGAAAGAAGAGTATGAAGTAACTATTCAGGCTTACAACAAGAAACTGGAAGGAAAAGATGAGGAAGATGGTTCCGACAAGTCAAAATCTGAAGTCAATGATGAAGATGAAGATGAGGAGGATGAGGACGACGAGGAAGATGAAGATTAG 429 0.4476 MPKAKADSKPAESRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVATVGKACGEKWQSLSEEEKAPYVARALKKKEEYEVTIQAYNKKLEGKDEEDGSDKSKSEVNDEDEDEEDEDDEEDED* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4385 142 MobiDBLite consensus disorder prediction 105 124 - -
Tpr4g4385 142 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Tpr4g4385 142 Coils Coil 88 115 - -
Tpr4g4385 142 PRINTS High mobility group (HMG1/HMG2) protein signature 3 23 - -
Tpr4g4385 142 PRINTS High mobility group (HMG1/HMG2) protein signature 71 90 - -
Tpr4g4385 142 PRINTS High mobility group (HMG1/HMG2) protein signature 90 110 - -
Tpr4g4385 142 SMART hmgende2 36 107 IPR009071 -
Tpr4g4385 142 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 140 IPR031061 -
Tpr4g4385 142 MobiDBLite consensus disorder prediction 1 43 - -
Tpr4g4385 142 MobiDBLite consensus disorder prediction 125 142 - -
Tpr4g4385 142 Gene3D High mobility group box domain 21 123 IPR036910 -
Tpr4g4385 142 MobiDBLite consensus disorder prediction 105 142 - -
Tpr4g4385 142 MobiDBLite consensus disorder prediction 1 19 - -
Tpr4g4385 142 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 140 - -
Tpr4g4385 142 CDD HMGB-UBF_HMG-box 37 103 - -
Tpr4g4385 142 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Tpr4g4385 142 SUPERFAMILY HMG-box 28 110 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4385 Tpr-Chr4 51140049 51141553 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Tpr4g4385 HMG_box 6e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4385 K25507 K22507 gmx:100499992 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4385 4 51140049 51141553 Tpr4g4385 4 51140049 51141553 ECH
Tpr2g1207 2 14145637 14147011 Tpr4g4385 4 51140049 51141553 ECH