Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4376 ATGGAAAACAACAAAAATGGTTCCTCTAAATCTATGTTACAATCCAATGTCCCTCAGAGTGATGGTGCCACAGATATGAGTCCTACAAGTGGAGAAGGTACAAGCACAAAGAATATTAAAATGTTGCCTGTGAGTTATTCAGTTTTGGATTCTGGTTGTCGGGGTCCCCTTAAGAGAGAAATTGGAACTATCATCAACAGTCCGAACAAAAGATATCGTGAAGTTTATGTGATTGAAGATGAAGAAGCTGGTACATCCAAATTGAAGGGCGTTGATGAATGTGTAAAAATCAACGTTCGTTACTTCAACGGTTCAAAGTTTTCTGTTCAAGTTGCACTCGAATCCACAGTTGAATCCTTCAAGGAGCTTATCGTTGGAAACAGTGGCATCCCCATTCAAAACCAGCGACTCATTTACAAGGGTCAAATCTTGCAGAATGATCGATCTCTTCAAAGCTATGGTTTGGGGGCAAATCATACTGTCCATCTGGTTCGTTGCTTTGCACGCACCGATACAGATGATGGGACGACCAGCAATAGTGAGGGGGGTGACTTACTTCAACAAGGAGATTTTCAACCAATGCCGCCACCATATGGTTTCGTTGATCCCAATTCAGTCAGAGATTTGTTCGATACACCGACTATGCGGTACCTGGCAGCTAACCCTGACATAATGTGGTGTATTTTAACGACCAATATTGAAGAATTACCACAAAACGAGGCTATTGATCTCAGCATTGTGATCCAGGTTCTTGAAGCTGCAAGGAATCCTGCAATCATGCACGAAATTATGATACTATCAGACCTCGAACTTAACAACTTTGGATTTTCTCCCGATGGATTCAACATATTGAGGCACATTATTTATGACGCAACTCAAGAACCAAATGGCACTATAATGGCTGGTAATGGTATTACAGGAATTTCCGGGACTTTTGACGGCAATGCCAGCGATCAATCAATTAATACTGAAACAAATGTCAGTTCTTCCTTACCCAATACTACCCCACTTCCCAATCCTTGGGCTTTTCCACCACTTCCCAATCCTTGGGATTTTCCAGAATCTTATTTTTGGTGTTGTAATCACTTGATATCAGACATTGCAGTTGTAGATGACCAGACTAATATCTGGAGATACACCACTGATTTTCCGGGCTTCGAAGCCATGTTGAATGGAAGTGTTATGCCAAATGATGCTATGCAGATTGATCAATACTATGCAGTTGTAGATGATCAGACTAATATCAGAAGATCAACCACTGATTTTTCGGGCCTTGAAGGCATATTGAATGGAAGTGTTATGCCGAATGATGCTATGCAGACCCAATTAGTGCAAGATCAACCAATCCGACAGTGCATAGAATTTATGCCTTCCAACCCAGAAGCTTTGTGCCAGTTTGATGGTGATAATATTGAACAACATGTCATGCCTGATTTAAGTTCCCTCAGAGAAGAGATTCAAAATCCGGAGTTTCTTCGTTTGCAGACCCCATTGTCTTTCTGGGAAGAAGATCTTCCACCTGAGCTTAGTCAGCAACAATCAATGCAGGAACTGAGTCAGACAACTGGAGACACTGATATGCAAGAGACAGCAGAACAATTGTATGCCAGTCAACTTTCACAGCTTCAAGATATGGGATTCAATGACAGAGAGGAAAACATAAGAGCTCTTATTCTCACTTCAGGGGATGTTCATGCAGCGGTTCGACATCTTTGGTGGCTCTCACATCAGTAG 1734 0.4175 MENNKNGSSKSMLQSNVPQSDGATDMSPTSGEGTSTKNIKMLPVSYSVLDSGCRGPLKREIGTIINSPNKRYREVYVIEDEEAGTSKLKGVDECVKINVRYFNGSKFSVQVALESTVESFKELIVGNSGIPIQNQRLIYKGQILQNDRSLQSYGLGANHTVHLVRCFARTDTDDGTTSNSEGGDLLQQGDFQPMPPPYGFVDPNSVRDLFDTPTMRYLAANPDIMWCILTTNIEELPQNEAIDLSIVIQVLEAARNPAIMHEIMILSDLELNNFGFSPDGFNILRHIIYDATQEPNGTIMAGNGITGISGTFDGNASDQSINTETNVSSSLPNTTPLPNPWAFPPLPNPWDFPESYFWCCNHLISDIAVVDDQTNIWRYTTDFPGFEAMLNGSVMPNDAMQIDQYYAVVDDQTNIRRSTTDFSGLEGILNGSVMPNDAMQTQLVQDQPIRQCIEFMPSNPEALCQFDGDNIEQHVMPDLSSLREEIQNPEFLRLQTPLSFWEEDLPPELSQQQSMQELSQTTGDTDMQETAEQLYASQLSQLQDMGFNDREENIRALILTSGDVHAAVRHLWWLSHQ* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4376 577 Gene3D - 84 179 - -
Tpr4g4376 577 SUPERFAMILY Ubiquitin-like 89 176 IPR029071 -
Tpr4g4376 577 Pfam Ubiquitin family 97 164 IPR000626 GO:0005515
Tpr4g4376 577 PANTHER UBIQUILIN 90 571 - -
Tpr4g4376 577 CDD UBA_PLICs 535 571 - -
Tpr4g4376 577 MobiDBLite consensus disorder prediction 1 37 - -
Tpr4g4376 577 Pfam UBA/TS-N domain 535 568 IPR015940 -
Tpr4g4376 577 CDD Ubl_Dsk2p_like 95 165 - -
Tpr4g4376 577 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 529 571 IPR015940 -
Tpr4g4376 577 Gene3D - 525 572 - -
Tpr4g4376 577 ProSiteProfiles Ubiquitin domain profile. 95 164 IPR000626 GO:0005515
Tpr4g4376 577 SMART ubq_7 95 166 IPR000626 GO:0005515
Tpr4g4376 577 SMART uba_6 535 573 IPR015940 -
Tpr4g4376 577 SUPERFAMILY UBA-like 520 572 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4376 Tpr-Chr4 51023961 51031617 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4376 95 164 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 2.00e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4376 K04523 - gmx:100776447 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4376 4 51023961 51031617 Tpr4g4376 4 51023961 51031617 ECH