Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4375 ATGGGAGGTGACGGCGTCGTTGATGATTCTACGTCGGAAACCAAGACCGAACTTGAAGGTGTTAACATCAACGTCCGATGCTCTAACGGTTCAAAGTATTCCGTTCGTGTTTCTCTCGATTCCACCGTTGGATCCTTCAAGGATCTCATTGCGCGTAACTGTGATATCCCTGCACAACAACAACGCCTTATTTACAAGGGTCGTATATTGAAGGACGATCAAACTCTTCAAAGCTATGGTTTGGAGGCAGATCATGCTGTGCATTTGGTTCGTAGCTTTGTACCTCCCAATGCGAGTGGTGGGACCAATAGTAGTGGCACCAATACCACAACAAATGATGCCGCAGGTGCTGGAGCTAGAGCTAATGATCTTGGGGGTTTAGGAGGGCTTGGTTTTGGAGGAGCTTCACTGTTTCCTGGACTTGGTAACAATGGTGCTGGGGGGAATGGCTTATTTGGCGAGGGATTTCCAGATCTTGAACAAATGCAGCAACCATTTATTTCAAACCCCAATTTAATGAGAGAAATGATGAATTCACCTGCTATGCAGAATCTAGTAAGTAATCCCGAGATAGTGCGGAATCTTATAATGAACAACCCACAGATGCAAGAGCTAATGGATCGTAACCCTGAGCTAGCACATATACTTAATGATCCAAGCACTCTCCGCCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGGGCAATGAGCAACATTGAATCTTCTCCAGAGGGATTCAACATGTTGAGGCGCATGTATGAAAACGTTCAAGAACCATTTTTAAATGCCACTACAATGGCCGGCAATACAGGAATTTCAGCAACTCGGGACCAATCAACTAATCCCTCAACCACTAGTTCTGAAACGACTGCTGGTTCTCCCATACCCAATGCTAACCCACTTCCTAATCCCTGGTCCTCTAATACAGGAACTGGAGTTCCCCAAACTAACACCAGAAGATCAACCACTGGTGGGGATGCTAGACAGCAAGCACCAACTGGCTTAGGAGGTCTTGGTTTGCCTGGACTTGAAGGCATGCTGGGTGGCAGTGGTATGCCAGATCCTGCTTTATTGACCCAATTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCGCAAACTTTGAGTCAGATTCTTGGTGCTGCTAATACTGAACAACGTGGCATGCCTGATTTAAATTCTCTTAGAGATGTGATGCAAAATCCAGAGTTTCTACGTTTGTTTTCATCACCTGAGACATTGCAGCAACTCATGTCTTTCCAACAAGCCCTTCTGTCTCAGCAGCAATCAGCACGGGAATCGGGTCAAACTGGTGGAGGGACTGGTACAGGGACTGGACCATTTAACAACATGGGGTTGGAGATGTTATCCAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCGGAGCAATTGTATGCCACCCAGCTTACTCAGCTTCAAGAGATGGGGTTCTTTGACACACAAGAGAACTTAAGGGCTCTCATTGCCACTTCGGGGAATGTTCATGCAGCAGTTGAACGTCTTTTGGGGAACTCTGGTCAGTAG 1623 0.4621 MGGDGVVDDSTSETKTELEGVNINVRCSNGSKYSVRVSLDSTVGSFKDLIARNCDIPAQQQRLIYKGRILKDDQTLQSYGLEADHAVHLVRSFVPPNASGGTNSSGTNTTTNDAAGAGARANDLGGLGGLGFGGASLFPGLGNNGAGGNGLFGEGFPDLEQMQQPFISNPNLMREMMNSPAMQNLVSNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGISATRDQSTNPSTTSSETTAGSPIPNANPLPNPWSSNTGTGVPQTNTRRSTTGGDARQQAPTGLGGLGLPGLEGMLGGSGMPDPALLTQLMQNPAISQMMQSMLSNPQTLSQILGAANTEQRGMPDLNSLRDVMQNPEFLRLFSSPETLQQLMSFQQALLSQQQSARESGQTGGGTGTGTGPFNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLTQLQEMGFFDTQENLRALIATSGNVHAAVERLLGNSGQ* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4375 540 Gene3D - 480 540 - -
Tpr4g4375 540 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 7 540 - -
Tpr4g4375 540 CDD UBA_PLICs 498 536 - -
Tpr4g4375 540 MobiDBLite consensus disorder prediction 282 343 - -
Tpr4g4375 540 Pfam UBA/TS-N domain 498 534 IPR015940 -
Tpr4g4375 540 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 492 537 IPR015940 -
Tpr4g4375 540 Gene3D - 193 252 - -
Tpr4g4375 540 SUPERFAMILY UBA-like 494 536 IPR009060 GO:0005515
Tpr4g4375 540 SUPERFAMILY Ubiquitin-like 13 108 IPR029071 -
Tpr4g4375 540 SMART CBM 398 433 IPR006636 -
Tpr4g4375 540 SMART CBM 199 238 IPR006636 -
Tpr4g4375 540 SMART CBM 341 394 IPR006636 -
Tpr4g4375 540 SMART CBM 145 186 IPR006636 -
Tpr4g4375 540 MobiDBLite consensus disorder prediction 282 339 - -
Tpr4g4375 540 Pfam Ubiquitin family 23 92 IPR000626 GO:0005515
Tpr4g4375 540 PANTHER UBIQUILIN 7 540 - -
Tpr4g4375 540 Gene3D - 7 106 - -
Tpr4g4375 540 SMART ubq_7 21 92 IPR000626 GO:0005515
Tpr4g4375 540 SMART uba_6 498 536 IPR015940 -
Tpr4g4375 540 CDD Ubl_Dsk2p_like 21 93 - -
Tpr4g4375 540 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4375 Tpr-Chr4 51013440 51018754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4375 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 3.25e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4375 K04523 - gmx:100776447 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1191 2 13891674 13897849 Tpr4g4375 4 51013440 51018754 PCT