Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4327 ATGGCTGATTCACCCCCTCAACGAAGGAATTCAAGGTCCCCTTCACCATCACCCTGGAAAGCTCAGTCAAGATCACGATCAAGATCGAGGTCTGTGCCAAGACAAAGGCCAAGATCTGACTCCAGAGGCCGTGGCAGGTCAAGGTCTCGAAGTCCTGAAAGGGGAGCCAATGCTACCAATCCTGGTAACACGCTTTATGTTACTGGTCTATCTTCAAGGGTCACAGAGAGGGACCTAGAGGATCATTTTAATAAAGAGGGAAAAGTTGCTTCATGTTTTCTTGTGGTGGAGCCACGTACCCGAATTTCTCGTGGTTTTGCTTTTGTTACAATGGATTCCCATGACGATGCTGAACGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGCCGTTACATCACTGTAGAACGGTCAAGAAGAAAGCGTGCAAGAACTCCAACACCGGGACACTATCTTGGGCTGAAAAATACTAGAGACTATGGCTCTCGTGGTGACCATCGTGGTGACCGCGGTGATCGTGGTGACTTTCGTGGTGACCATCGCGGTGACTTTCGTGGTGACCATCGCGGTGATCATCGTGGTGATTTTCGTGGTGACCATCGTGGTGATTTTCGTGGTGACTATCGCGGTGACCGGGGAAGGAGTCGTGGTGGTTCTGGTCGTGGCGACTATTCATATCGTAGATCTCCAAGGCGTTCACCATACCGCGGAGGCCACGATCATTCGCCACAACACTCACCCTATGTTGGAAGGTCTAGGAGGGAGAGATCTAGGTCCATTCCTCAGTCTCCTTATAGCCCAGACAGGAGGTATGCTGGTGGATCTAGGTGA 834 0.5036 MADSPPQRRNSRSPSPSPWKAQSRSRSRSRSVPRQRPRSDSRGRGRSRSRSPERGANATNPGNTLYVTGLSSRVTERDLEDHFNKEGKVASCFLVVEPRTRISRGFAFVTMDSHDDAERCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTRDYGSRGDHRGDRGDRGDFRGDHRGDFRGDHRGDHRGDFRGDHRGDFRGDYRGDRGRSRGGSGRGDYSYRRSPRRSPYRGGHDHSPQHSPYVGRSRRERSRSIPQSPYSPDRRYAGGSR* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4327 277 MobiDBLite consensus disorder prediction 226 240 - -
Tpr4g4327 277 SUPERFAMILY RNA-binding domain, RBD 58 171 IPR035979 GO:0003676
Tpr4g4327 277 Gene3D - 3 147 IPR012677 -
Tpr4g4327 277 MobiDBLite consensus disorder prediction 52 66 - -
Tpr4g4327 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Tpr4g4327 277 MobiDBLite consensus disorder prediction 33 51 - -
Tpr4g4327 277 PANTHER RNA RECOGNITION MOTIF 2 201 - -
Tpr4g4327 277 PANTHER RNA RECOGNITION MOTIF 209 273 - -
Tpr4g4327 277 MobiDBLite consensus disorder prediction 160 219 - -
Tpr4g4327 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Tpr4g4327 277 SMART rrm1_1 64 137 IPR000504 GO:0003723
Tpr4g4327 277 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 209 273 - -
Tpr4g4327 277 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 201 - -
Tpr4g4327 277 MobiDBLite consensus disorder prediction 1 26 - -
Tpr4g4327 277 MobiDBLite consensus disorder prediction 1 66 - -
Tpr4g4327 277 MobiDBLite consensus disorder prediction 139 277 - -
Tpr4g4327 277 CDD RRM_RBMX_like 62 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4327 Tpr-Chr4 50485264 50488278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4327 60 125 Eukaryotic Initiation Factors Gene Family AT3G11400 39.394 2.38e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4327 K12897 - gmx:100800398 208.764