Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4321 ATGGAGTTTATGGCAAATCCATGCCCTTTATTGGATTTATTTGTTAATTTGGTTAAGAGGGTCAGATGGGTTAGTGGCCTCATCATCTCAGTCATCATTGGAAACATCTTCTGTGCGATCTTGACATTCTGCTTTGCATTTGTGGGAACTTTGTTGGGGGCTATGACTGGAGCATTGATAGGTCAAGAAACAGAGAGTGGCTTCATACGAGGTGCTGCTGTTGGTGCTGTTTCAGGGGCTGTTTTCTCTATTGAAGTCTTTGAATGTTCTCTTGATCTTTGGCATTCTGATCAATCTGGAATTTGTTGTCTCCTTTACTTGATTGATGTTATTAGTAGCCTACTGAGTGGGAGACTTGTACGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCTGATGAAATGAGCTTTTATGAGTTTCAAAATATATTTGACATTGGAGGTGACAGAGGTTTATCAGGAGCTTCAGTTGAAAAGATCCCAACAATCTCAATCACAAGTGACAACAATTTTGATGCTTCTGGTGACAGAGTTTCATGTTCAGTTTGCCTTCAGGATTTCCAAATTGGAGAGACAGTTAGAAGCTTGCCTCATTGTCATCATATGTTTCACCTACCTTGCATTGACAAGTGGCTCATCAAACATGGCTCTTGCCCATTATGCAGAAGAGATCTATAA 696 0.4109 MEFMANPCPLLDLFVNLVKRVRWVSGLIISVIIGNIFCAILTFCFAFVGTLLGAMTGALIGQETESGFIRGAAVGAVSGAVFSIEVFECSLDLWHSDQSGICCLLYLIDVISSLLSGRLVRERIGPAMLSAVQSQMGADEMSFYEFQNIFDIGGDRGLSGASVEKIPTISITSDNNFDASGDRVSCSVCLQDFQIGETVRSLPHCHHMFHLPCIDKWLIKHGSCPLCRRDL* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4321 231 CDD RING-H2_PA-TM-RING 186 228 - -
Tpr4g4321 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 231 IPR013083 -
Tpr4g4321 231 Pfam Ring finger domain 185 228 IPR001841 -
Tpr4g4321 231 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 14 231 IPR044523 -
Tpr4g4321 231 ProSiteProfiles Zinc finger RING-type profile. 186 228 IPR001841 -
Tpr4g4321 231 SUPERFAMILY RING/U-box 185 231 - -
Tpr4g4321 231 SMART ring_2 186 227 IPR001841 -
Tpr4g4321 231 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 14 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4321 Tpr-Chr4 50388431 50391563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4321 15 231 C3H Transcription Factor Family AT5G66070 69.124 5.76e-106 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4321 - - gmx:100306109 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1151 2 13470273 13472484 Tpr4g4321 4 50388431 50391563 PCT