Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4296 ATGGCTACTAAGTGCATGCATGTTTTTGATAGATTGATGTTTTCTGTCACTTGTTGGAAGAAAAGTAGCACACAAACTGGCAGAAGAAAGTTCCATAGGGATGTAGAGAAAGAAGAATTCCAGTATGCAAGTACTCAATGTCTATCATCCTATTACAGTGTCTTCGTCGTTCGCCTAGCAATCATGGTTATGCTAGCTATCTTGATTGGTCTACTGACCATCCTAACATGGCATTTCACAAAGATTTATACAACAAAATCTCTAAATAGTTTGGCTTATGACCTGCGTTACGAACTTCTGCAACGTCCCATCTTGAGGATGTGGAACATTTTGAACTCTACTGCTGAAATCACAACTGCTCAAGTTAAGTTGTCTGAGTATGTTATCAGAAGCCACAACAAACTAGCCACTCAAGAAGATCATGTTGAGATGTATGAAGCCATGAGAGCTGTCACATGGGCACTGTTTTCTAGTCGAAAAGCTCTCAACTCGATTACTGTCAAATATGGAAACGGTTTTGTCCAGGCATTTCATAGAGACTTGAAGGATAATAATAGTACTTTTTACATTTACACTGATCTTGCATATAACGAGACCAGCGAAGCTTTGAATGATAAAGAAATTCATAACAACAAGACTGTGATTTGGTACCGGGAACAGCTTGATCCAGTTAGTGGCGAGAAGATTGGAAAAGCAATGAAAATTGCACCAGAAGACTCGATAAGTATAGCTGGCATGTCACAAGTACCTGATGGTGTAGCTTCGTGGCACGTTTCTGTGAGCAAGTTTACAGATTCACCGCTACTTTCAGCAGCATTGCCGGTTTGGGATTCTTCTAATAAGAGTATTGTAGCAGTTGTCGGTGTCACAACAGCGCTTTATAGTGTAGAGCAGTTAATGAAGGAACTAGTTGACAAGCACAGTGGTCATATGTATTTGACTTCTCAAAAGGGCTATTTGCTTGCAACTTCCACAAATGACCCTCTACTGACAAATTCAACAAAGAAACCTAAGCTTAAACTGGCTGTTGATTGCGATAACGAAGTAATACGAGAGGGAGCGATGTGGCTACAGAAAACCTATGGAAACAATTTTCCTCCAAGTCACGAGGTTCATGTAGAGAATGCCAGGCTAGGTCACCAGCAATATTACATTGACTCATTCTTCCTAAACTTGAAAAAGCTTCCTCTGGTCGGTGTAATAATCTTACCAAGGAAGCATATCATGGGGCAGGCAGATCAAAGAGCCTTCAAAACATTGGTTATTCTGATATCAGCATCATTGTGTATTATAGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTATCAAAGGAAATGAATCTAAGAGCAGAATTAATCAGTCACCTGGAAGCAAGAAGGAAGGCCGAGGCATCCAGCAACTATAAAAGCCAATTTCTTGCAAATATGAGTCATGAATTACGGACACCGATGGCAGCAGTAATCGGATTACTTGACATTCTTTTGTCTGATGATTGTCTCACAAATGAACAATATGCAACTGTTACTCAAATAAGAAAATGTTCAACCACATTGCTCCGTTTACTCAATAACATCTTGGATCTAAGCAAGGTGGAATCTGGAAAACTTGTCCTAGAAGATGCAGAATTTGACTTGGGAAAGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAATGCATTAACCACAATGTAGAAATTATTTTAGACCTTTCTGATGATATGCCGAAGATAGTTCGGGGAGATTCTGATAGAGTTGTTCAAATTTTTGCAAATTTGATCAACAACTCAATCAAGTTTACTCTATCTGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATTCTTATGGTGATAACGAAAGTTTTACTATGGAGCAGAAGAAATTGGTGTGTTCTCAGAAGACCATAACAAAGCAGCATGAAAACACTGCAAAGAAGACTTCTAATAATGATAAGAAAATGATACTTTGGTTTGAAGTCGATGACACGGGCTGTGGTATTGACCCAAGTAAATGGGATTCGGTGTTTGAAAGCTTTGAGCAAGCTGACCTATCAACTACTAGGCTGCATGGAGGCACTGGTCTTGGTCTATGCATTGTCAGATCCTTGGTTAATAAGATGGGTGGAGAAATTAAGATTGTCAAAAAGGAAGGCCCAGGAACACTAATGCGATTGTACCTGCGACTCACCGCACCTGTGGATGCCACAGAACAACATTGTCAAGTCGATTTTGCTAACAATAACTTAGTGGTACTTCTTGCACTACATGGCAACATGAGTAGATTAATTACATCTAAGTGGTTAAATAAAAACGGTGTGGTCACTATGGAAGCATCTGAATGGAATGGATTAACACAAGTTCTAAAAGAACTATTTCATGCCAAAACTCCAACTCATAACAATGACTTCGATGCACATTATTCAGCTCATCGGGGTCTGAAATCTAAACTGCTGAGTCTGCAAGAATTGACAAACCCTATATTTGTAATTGCTGTTGACATTGATCTACTTGACTTGAGCACAGATATTTGGAAGGAACAGATTAACTTCCTTCACAAGTACTACGCGAGAGCAAAATTCATATGGTTACAAAACCATGACTCGTCCAATAACGTAAAGACGGAGCTTCGCAAGAAAGGACATATACTAACTGTCAACAAACCTCTTTACAAAGCAAAGATGATTCATATTTTGGAAGATGTCATAAAGGAAAGAAATATTGAGGTACAAAAGAAAAATACGATTACTCCAAGAACCACAGTGAAAGAGAGTGATTTGCATGAGAGTTTTGAAATTGATTATAATCATTGTGATGTTGCAAGCTCAGATGGTTCTGACATATCGGAAATTGGTAGTTCTAATCCATCATCACTATATCTGAAAAGTAACTGCTTATTAGGATTAACTAATGAATATATGGAACAAAATAGTTCTAGGAAAGAAGCATCCGTTTCGAAAAGAGAAAAAGGTGAAGATTCTGAATGTAGTAGGGTCAATGGTTCAACTAAAGCCGTTAATGGAAAGAAGTCTCTTGAAGGATTGAGGATATTGCTTGCAGAAGACACAGTAGTAATTCAAAGGGTTGCAACCATAATGCTAGAAAAAATGGGAGCCGTTGTTGTTGCTGTAGGTGATGGACAACAGGCAGTAGATGCTCTAAATGGCACGCTTGGTGTCGAAGATTGTAGAATGGAGTCTCTCTTAAAGGAAAGGAACAAAGAAACATCTCAAACTGAGATTCTAAGCTTCCCTGCATATGACTTGATCCTTATGGATTGCCAGATGCCAAAGATGGATGGATATGAAGCAACAAAAGAAATAAGGAAATCAGAAGTGGGAAGTGGATTCCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAATGTTTGGAAGTTGGCATGGATGCTTATTTAACTAAGCCAATTGACTTTAAACTTATGGAGTCTACCATTCTTTCGCTCACAAAAGAGAAAGCTTAA 3513 0.3874 MATKCMHVFDRLMFSVTCWKKSSTQTGRRKFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSEYVIRSHNKLATQEDHVEMYEAMRAVTWALFSSRKALNSITVKYGNGFVQAFHRDLKDNNSTFYIYTDLAYNETSEALNDKEIHNNKTVIWYREQLDPVSGEKIGKAMKIAPEDSISIAGMSQVPDGVASWHVSVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVEQLMKELVDKHSGHMYLTSQKGYLLATSTNDPLLTNSTKKPKLKLAVDCDNEVIREGAMWLQKTYGNNFPPSHEVHVENARLGHQQYYIDSFFLNLKKLPLVGVIILPRKHIMGQADQRAFKTLVILISASLCIIVIGCVCILILTNGVSKEMNLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDCLTNEQYATVTQIRKCSTTLLRLLNNILDLSKVESGKLVLEDAEFDLGKELEGLVDMFSVQCINHNVEIILDLSDDMPKIVRGDSDRVVQIFANLINNSIKFTLSGHIILRGWCENPNSYGDNESFTMEQKKLVCSQKTITKQHENTAKKTSNNDKKMILWFEVDDTGCGIDPSKWDSVFESFEQADLSTTRLHGGTGLGLCIVRSLVNKMGGEIKIVKKEGPGTLMRLYLRLTAPVDATEQHCQVDFANNNLVVLLALHGNMSRLITSKWLNKNGVVTMEASEWNGLTQVLKELFHAKTPTHNNDFDAHYSAHRGLKSKLLSLQELTNPIFVIAVDIDLLDLSTDIWKEQINFLHKYYARAKFIWLQNHDSSNNVKTELRKKGHILTVNKPLYKAKMIHILEDVIKERNIEVQKKNTITPRTTVKESDLHESFEIDYNHCDVASSDGSDISEIGSSNPSSLYLKSNCLLGLTNEYMEQNSSRKEASVSKREKGEDSECSRVNGSTKAVNGKKSLEGLRILLAEDTVVIQRVATIMLEKMGAVVVAVGDGQQAVDALNGTLGVEDCRMESLLKERNKETSQTEILSFPAYDLILMDCQMPKMDGYEATKEIRKSEVGSGFHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTKEKA* 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4296 1170 MobiDBLite consensus disorder prediction 985 1001 - -
Tpr4g4296 1170 ProSiteProfiles Response regulatory domain profile. 1020 1166 IPR001789 GO:0000160
Tpr4g4296 1170 SUPERFAMILY CheY-like 1017 1166 IPR011006 -
Tpr4g4296 1170 PANTHER OSMOSENSOR HISTIDINE KINASE 1 963 - -
Tpr4g4296 1170 PANTHER OSMOSENSOR HISTIDINE KINASE 989 1167 - -
Tpr4g4296 1170 Pfam Response regulator receiver domain 1021 1159 IPR001789 GO:0000160
Tpr4g4296 1170 CDD HisKA 472 533 IPR003661 GO:0000155|GO:0007165
Tpr4g4296 1170 Gene3D - 459 538 - -
Tpr4g4296 1170 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 526 733 IPR036890 -
Tpr4g4296 1170 SMART REC_2 1019 1162 IPR001789 GO:0000160
Tpr4g4296 1170 CDD REC_hyHK_CKI1_RcsC-like 1021 1162 - -
Tpr4g4296 1170 SMART HisKA_10 471 537 IPR003661 GO:0000155|GO:0007165
Tpr4g4296 1170 MobiDBLite consensus disorder prediction 981 1006 - -
Tpr4g4296 1170 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 584 735 IPR003594 -
Tpr4g4296 1170 Gene3D - 539 738 IPR036890 -
Tpr4g4296 1170 Gene3D - 999 1167 - -
Tpr4g4296 1170 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 458 538 IPR036097 GO:0000155|GO:0007165
Tpr4g4296 1170 ProSiteProfiles Histidine kinase domain profile. 478 736 IPR005467 -
Tpr4g4296 1170 PRINTS Bacterial sensor protein C-terminal signature 661 675 IPR004358 GO:0016310|GO:0016772
Tpr4g4296 1170 PRINTS Bacterial sensor protein C-terminal signature 679 689 IPR004358 GO:0016310|GO:0016772
Tpr4g4296 1170 PRINTS Bacterial sensor protein C-terminal signature 696 714 IPR004358 GO:0016310|GO:0016772
Tpr4g4296 1170 PRINTS Bacterial sensor protein C-terminal signature 720 733 IPR004358 GO:0016310|GO:0016772
Tpr4g4296 1170 Pfam His Kinase A (phospho-acceptor) domain 472 537 IPR003661 GO:0000155|GO:0007165
Tpr4g4296 1170 SMART HKATPase_4 584 736 IPR003594 -
Tpr4g4296 1170 PANTHER TWO-COMPONENT HISTIDINE KINASE 989 1167 - -
Tpr4g4296 1170 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 963 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4296 Tpr-Chr4 50117935 50124683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4296 8 1170 Histidine Kinase Gene Family AT2G17820 64.081 0.0 1499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr4g4296 HATPase_c 2.3e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4296 - - gmx:100801970 1871.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4296 4 50117935 50124683 Tpr4g4296 4 50117935 50124683 ECH
Tpr2g1126 2 13203583 13210542 Tpr4g4296 4 50117935 50124683 PCT