Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4288 ATGTTGTGTGATGTTGTTCCTGGAAGAGAATCATGGAGGGTTAAGGTTCGGGTTATTCGTGTTTGGGAAGTTCCTAATTTCTTGAATCATGACCAGACTAATTCTATTGAAATGGTCTTGATTGATGAAAAGGGAGGAAAGATTCATGCGACTATTAGGAAACAACTGCTGTATCTTTTTAAGCTTAAGATTATGGAGGGTCAGACTTATAAACTTTCATACTTGGCTGTTGCACCCAGTAGTGGTAGCTATCGTACCACTCTGCATCCATACAAGTTTTTTTTCCAGATGAAAACCAAAGTCCAAATCTGTGAGGGTGATTCCATACCAAAGTTTGGGTTGTCTTTTAGCAATATCTCCGATGTTTTATCCCATACGGTTGATTATGATTACTTGGTTGATGTGCTGGGTATAATGACTGGTATATCTGTTGAGAGAGAATACATTAAAGATGGAAGGGTTACAAAAATGATAGTCATGGAATTGACTGATAAGAGTGGAAAATGTGAAGTTGCATTGTTTGGAGATTATGTTGATATTCTTCAGAAGAAAATGGAGAATACTTCCGAAGGATTGCCGGTTGTAGCTGTCCAGTTTGCGAAGCTGAAGATTTTTAGAGATAAAGTTTCTCTACAAAATGTCATGAATACTACTCAGATTTTCATTAATCCTGATATTCAAGAGGCTGTCGAATTAAAAATTGGGGATATTTCTTCTGGGCTTGACCAAACCGGGGTTGTTCCTGTACTTGGTCCTCGGGCCAAACCTACTTTTGAAGAAGATTTTATACGTGATAATCCAAAAAGCACTATCTCAAGTCTGTTGGGTTCATCTGAAGATGGTATATATGTTGTGCTGGGTATAATCAGTGATTTGGTTGAAGGGCAGGACTGGTGGTATCCTGCCTGTCGTTGTCATAGAATTGTCAGTGCTGATTCTGGTGCCTATTATTGTAAAGGGTGTGTAAAGCATGTCTTTCATATGGTGCCTAGGTTTAAAGTCAAGTTTCGTGTTCGCGATGCTACTGGTGATGCTATTTTTGTTGTTTTCGATTCGGATATGTTCAACCTTATTGGAAAACAGTGTAGTGATCTGGTTTCTGCTGGAAAGGCTGAAAATGCTGGTTTCTATCCAAGTGAACTGAAGGATTTGGTTGGTACTAAACTGCTTTTCAAGGTTGAGAAATCTTCCTCAACCCATGTTTTATTTGATGGTTCATTTAGGGTCAAGCGAATTTGCAATGATGCATCCGTTATGCAAATTTTCAATCCTTCTCTGCTGCAAGTTTCTACCAAAGAGGTTGTTATAGATTATTAA 1317 0.3842 MLCDVVPGRESWRVKVRVIRVWEVPNFLNHDQTNSIEMVLIDEKGGKIHATIRKQLLYLFKLKIMEGQTYKLSYLAVAPSSGSYRTTLHPYKFFFQMKTKVQICEGDSIPKFGLSFSNISDVLSHTVDYDYLVDVLGIMTGISVEREYIKDGRVTKMIVMELTDKSGKCEVALFGDYVDILQKKMENTSEGLPVVAVQFAKLKIFRDKVSLQNVMNTTQIFINPDIQEAVELKIGDISSGLDQTGVVPVLGPRAKPTFEEDFIRDNPKSTISSLLGSSEDGIYVVLGIISDLVEGQDWWYPACRCHRIVSADSGAYYCKGCVKHVFHMVPRFKVKFRVRDATGDAIFVVFDSDMFNLIGKQCSDLVSAGKAENAGFYPSELKDLVGTKLLFKVEKSSSTHVLFDGSFRVKRICNDASVMQIFNPSLLQVSTKEVVIDY* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4288 438 Gene3D - 264 421 IPR012340 -
Tpr4g4288 438 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 16 369 - -
Tpr4g4288 438 CDD RPA1_DBD_B_like 134 233 - -
Tpr4g4288 438 Gene3D - 1 104 IPR012340 -
Tpr4g4288 438 SUPERFAMILY Nucleic acid-binding proteins 275 417 IPR012340 -
Tpr4g4288 438 Pfam Replication factor-A C terminal domain 293 399 IPR013955 -
Tpr4g4288 438 PANTHER REPLICATION FACTOR A 1, RFA1 16 369 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr4g4288 438 CDD RPA1_DBD_C 271 393 IPR013955 -
Tpr4g4288 438 CDD RPA1_DBD_A_like 13 101 - -
Tpr4g4288 438 Gene3D - 108 235 IPR012340 -
Tpr4g4288 438 SUPERFAMILY Nucleic acid-binding proteins 2 107 IPR012340 -
Tpr4g4288 438 Pfam Domain of unknown function DUF223 37 132 IPR003871 -
Tpr4g4288 438 SUPERFAMILY Nucleic acid-binding proteins 114 233 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4288 Tpr-Chr4 50035105 50038548 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4288 7 359 Core DNA Replication Machinery Family AT2G06510 23.370 1.15e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4288 - - mtr:MTR_8g062030 503.827