Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4287 ATGGTTGATGCTTATAGCAATTTAAGTGATGTTCGTGTTGGAAATTTTCCATGGTGTTTGAAGGTTCGTGTGATTCGTCTTTGGGTGGTCAAATCCAATTTAATTTCTGGGCAAGAAAATTCAATTGAGCTTGTGCTTCTTGATGAAAAGGGATGCAAGATACATGCTACTGTCCGGAGACACTTGATTCCTTTGTTTAAAGCTGTTATTATTGAAGGTGAAGTTTATACTTTATCTGCGTTTTCTGTTGTTGATGCTTATGGATTATGCAGGCCAACTAGGCATCCTTGTCGGTTGTTTTTTCATTCTACTACTATTTTGGAGAAAATGGTGTGTCGAGCAATCAAAATGAATGGATTGTCGTTGGTGGACATTGGCCAAATTAATTCTCATTCATGTGATAGTAATTATTTAGTTGATTTTATGGGGGTAATGACTGGTATATCTTCCCAGAATGAGTTTCTTAAAGATGGTCAACGTGTCAAAATGATTGTTGTTGAGATATCTGATCACAGAGGTTTCTGTCATGTTGTTCTGTTTGGCGAAATTGTTGATTACTTGGTTCAGATGATGACCACTCTCGACGGAGGTCTACCGGTGGTTGTTATTCAATTTGCCAAGATCAGATTTTTTCGTGGTCGTGTTCTTTTACAGAATATTCAAAATCTAACTAGGATGTTGTTTAATCCTCCAGTTGATGAATCTGTACTTTTAGGAAGAAGGTTATCTAAAATGCGAGGTGGACCTGCAATGACTGTTCCGTTAATTGGTCCTCCCGTTAAACCTTCGGTCGTGGATGATTTTCTTCGTCTATATCCAAAGAAAACTATTGCTGAGTTGAAATCTACACCTGATGATGGGCCATTTATTGTATCTGGTGTTGTGGACGGTTTGGTAATTGGAGAAGATTGGTGGTACCCTTCGTGTCGTTGTTCAAAACGTTTAATAATTAATGCTGGATATTATTACTGTAGAGGTTGTTCAAAGCATGTGTTTGAATTTGTCCCTAGGTTTCGCGTCAAAATACATGTTACCGATGGCATTGATGATGCCATGTTTGTTCTTTCTGATGATGATGTCCGTTACCTGACCCGTACCAAGTGTAGCATTCAGCTTTCATCATCCAAGCAGGTTTTGGAAGGAATTAATCCACCTAGTGCTTTGATGAAAATTGAAGGTTTAAAATTGTTGTTTAAGATTGTCATGGTGTCTTCTTTGAATCCTATATACAAAGGTGCTTTCAAAGTTTCTAGGGTTTGTCTTGATCCAGATATTTTCAATGCTTTTTCTCTTAAGGGAACACGCCATACTCCTGCAAAGCAGGTTTATAGGCCAGTAATGAGCGAGGTTGTCTATCCCTCGGGTTTGATTGAAGAGATCAATCAACATGGGGAATATTTATCAAACAAAAGATTGGCTGGTTCATTTGATAATACACTTGGGGAGGAAATTGCAGATCATCACAAGCGATCTAGAGATTGTTGA 1485 0.3818 MVDAYSNLSDVRVGNFPWCLKVRVIRLWVVKSNLISGQENSIELVLLDEKGCKIHATVRRHLIPLFKAVIIEGEVYTLSAFSVVDAYGLCRPTRHPCRLFFHSTTILEKMVCRAIKMNGLSLVDIGQINSHSCDSNYLVDFMGVMTGISSQNEFLKDGQRVKMIVVEISDHRGFCHVVLFGEIVDYLVQMMTTLDGGLPVVVIQFAKIRFFRGRVLLQNIQNLTRMLFNPPVDESVLLGRRLSKMRGGPAMTVPLIGPPVKPSVVDDFLRLYPKKTIAELKSTPDDGPFIVSGVVDGLVIGEDWWYPSCRCSKRLIINAGYYYCRGCSKHVFEFVPRFRVKIHVTDGIDDAMFVLSDDDVRYLTRTKCSIQLSSSKQVLEGINPPSALMKIEGLKLLFKIVMVSSLNPIYKGAFKVSRVCLDPDIFNAFSLKGTRHTPAKQVYRPVMSEVVYPSGLIEEINQHGEYLSNKRLAGSFDNTLGEEIADHHKRSRDC* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4287 494 SUPERFAMILY Nucleic acid-binding proteins 272 400 IPR012340 -
Tpr4g4287 494 Pfam Domain of unknown function DUF223 43 114 IPR003871 -
Tpr4g4287 494 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 19 371 - -
Tpr4g4287 494 Gene3D - 270 419 IPR012340 -
Tpr4g4287 494 CDD RPA1_DBD_A_like 19 106 - -
Tpr4g4287 494 Gene3D - 114 247 IPR012340 -
Tpr4g4287 494 Gene3D - 6 111 IPR012340 -
Tpr4g4287 494 PANTHER REPLICATION FACTOR A 1, RFA1 19 371 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr4g4287 494 SUPERFAMILY Nucleic acid-binding proteins 7 109 IPR012340 -
Tpr4g4287 494 SUPERFAMILY Nucleic acid-binding proteins 120 238 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4287 Tpr-Chr4 50030592 50033378 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4287 18 346 Core DNA Replication Machinery Family AT2G06510 22.000 1.15e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4287 - - mtr:MTR_8g062030 362.073