Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4275 ATGGCGGAAGAAAGATTCACCGGTGTGGTTCTATGGTTCAGCAACAGCAAAGGCTTCGGTTTCATCAAACCCGATAACGGTTCCGATGATGTCTTCGTTCATCAATCTTCCATCAGATCCGATGGATTCCGCACTCTTGTTGATGGCGATCTCGTCGAATTCTCCATCGCATCCAGCGACAACGACAAAACCAAAGCCGTCGATGTCACTGGTCCTAACGGCGCTCCTCTTGGCGGAGGTGGCGGCGGTCGTGGATTTAGGGGTGCTGATAGGCGTAATGGTGGCGGCGGCGGCGGTGGCTGTTACAACTGTGGTGATACTGGCCACATCGCTAGGGAATGCAACCGGATCAATAACTCCGGCGGAGGTGGCGGTGGAAACGCAGGCTGTTATAACTGCGGTGAAACTGGCCACATCGCTAGGGATTGCAACCGGAGCAATAACTCCGGCGGAGGTGGAGGTGGAGGCCGTGAATGTTATACTTGCGGCGCGTTTGGACATATCGCTAGGGATTGCATGCGTGGAGGCAACATCGGAGGCGGAATTGACCGTGGCAGCGGTGGTGGCACTTCATGCTACAGATGTGGCGGATTCGGTCACATTGCAAGAGATTGCGCTACTCCAAGCAGCGGAAACAGCAGCGGTGGTTGCTATAACTGCGGCGAGGTCGGTCACATTGCTAGGGATTGCAGCGTTGAAGGCGGAAGATTTGATGGCGGTGGCAACGGAAGGTTTGATGGTGGCAACAGAAGGTATGGCGGCGGCGGGGATGGAGGGAAGACCACATGCTTCAATTGTGGGAAGCCTGGACATTTTGCAAGGGAGTGCGTTGAGGCTTCTGTTTGA 846 0.552 MAEERFTGVVLWFSNSKGFGFIKPDNGSDDVFVHQSSIRSDGFRTLVDGDLVEFSIASSDNDKTKAVDVTGPNGAPLGGGGGGRGFRGADRRNGGGGGGGCYNCGDTGHIARECNRINNSGGGGGGNAGCYNCGETGHIARDCNRSNNSGGGGGGGRECYTCGAFGHIARDCMRGGNIGGGIDRGSGGGTSCYRCGGFGHIARDCATPSSGNSSGGCYNCGEVGHIARDCSVEGGRFDGGGNGRFDGGNRRYGGGGDGGKTTCFNCGKPGHFARECVEASV* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4275 281 SUPERFAMILY Retrovirus zinc finger-like domains 247 276 IPR036875 GO:0003676|GO:0008270
Tpr4g4275 281 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Tpr4g4275 281 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Tpr4g4275 281 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Tpr4g4275 281 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Tpr4g4275 281 ProSiteProfiles Zinc finger CCHC-type profile. 130 143 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 ProSiteProfiles Zinc finger CCHC-type profile. 192 205 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 1 206 - -
Tpr4g4275 281 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 148 279 - -
Tpr4g4275 281 SUPERFAMILY Retrovirus zinc finger-like domains 83 118 IPR036875 GO:0003676|GO:0008270
Tpr4g4275 281 ProSiteProfiles Zinc finger CCHC-type profile. 263 276 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Tpr4g4275 281 ProSiteProfiles Zinc finger CCHC-type profile. 217 230 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 Pfam Zinc knuckle 192 206 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 Pfam Zinc knuckle 100 114 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 Pfam Zinc knuckle 129 143 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 Pfam Zinc knuckle 216 231 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 Pfam Zinc knuckle 158 173 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 ProSiteProfiles Zinc finger CCHC-type profile. 159 172 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Tpr4g4275 281 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 SMART c2hcfinal6 216 232 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 SMART c2hcfinal6 158 174 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 SMART c2hcfinal6 191 207 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 SUPERFAMILY Retrovirus zinc finger-like domains 121 174 IPR036875 GO:0003676|GO:0008270
Tpr4g4275 281 ProSiteProfiles Zinc finger CCHC-type profile. 101 114 IPR001878 GO:0003676|GO:0008270
Tpr4g4275 281 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Tpr4g4275 281 Gene3D - 126 180 - -
Tpr4g4275 281 Gene3D - 214 236 - -
Tpr4g4275 281 Gene3D - 255 280 - -
Tpr4g4275 281 Gene3D - 90 125 - -
Tpr4g4275 281 Gene3D - 183 213 - -
Tpr4g4275 281 SUPERFAMILY Retrovirus zinc finger-like domains 185 232 IPR036875 GO:0003676|GO:0008270
Tpr4g4275 281 Gene3D - 1 81 IPR012340 -
Tpr4g4275 281 SMART csp_8 7 72 IPR011129 GO:0003676
Tpr4g4275 281 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 206 - -
Tpr4g4275 281 PANTHER COLD SHOCK DOMAIN PROTEIN 2 148 279 - -
Tpr4g4275 281 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4275 Tpr-Chr4 49916753 49917919 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Tpr4g4275 CSD 3.7e-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4275 K09250 - gmx:100806783 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4275 4 49916753 49917919 Tpr4g4275 4 49916753 49917919 ECH