Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4273 ATGGCAGACATAGTAAAACAACTTTTAGCAAAACCGATCCAATTAGCAGACCAAGTAAGCAAAGCAGCAGAAGAAGGAAGTTCATCATTCAAATCAGAATGTTTAGAATTAAAATCCAAAACCGAAAAACTCGCTTCTCTTCTCCGACAAGCCGCAAGATCAAGCTCCGATTTATACGAAAGACCAACACGTCGAATCATCGGAGACACCGAACAAGTTCTCGAAAAAGCATTAACCTTAGTTCTCAAATGTAAAGTCAACGGTCTCATGAAACGCGTTTTCAGCATAGTACCTTCCGCCGCTTTTCGGAAAATGTCTTCTCATCTTGAGAATTCAATCGGTGATGTTTCATGGCTTCTCCGTGTTTCAGCTCCGGCTGAAGAAGGTAGTTATGAATGTTTAGGTCTTCCACCTATTGCTTCTAATGAACCGATTTTAGGTTTAATTTGGGAACAAATTGCGATTCTTCATAATGGATCTTTTGATGATCGATCTGATGCTGCTGCTTCTTTGGTTTCTCTTGTTCGCGATAATGATCGGAATGGGAAATTGATTATTGAAGAAGGTGGTGTTGGTCCTTTGTTGAAACTTTTGAAAGAAGGTAAAAAAGAAGGTCAAGAAAATGCTGCTAAAGCTATTGGACTTTTAGGTCGTGATGCTGAAAGTGTTGAGGTTATGATTCATGCTGGTGTTTGTTCTGTTTTTGCAAAGATTCTTAAAGAAGGTCCTATGAAAGTTCAAGCTGTTGTAGCTTGGGCTGTTTCTGAACTTGTTTCTAAGTATCCTAAATGTCAAGATGTTTTTGCTCAGCATAATATTGTTAGGTTACTTGTTAGTCATATTGCATTTGAAACTGTTCAGGAACATAGTAAATATGCCATTGTTAGTAATAAGCCGAATTCCATTCATGCTGTTGTGATGGCTAGTAGTAATGGTGCTGCTGCTGTTGGTAATAATGGTGATATGTCGGGTTCGAATGATGTGAAAAAAGAAACTGAAGATGAGGTGAAAATTCGGATGAATCATCCTTTAGGTGATAGGTCTACGAATCAGATGCATAAAGTGGTGACTAGTACTATGGCAAAGCATGCTGCAAGTGCAAACAGCAACAAGAATCAGAAAACTGATGAAAGTGGTGAAGCGGGTCTAAACTCTCATTCTCAGGTGGCTGGTCAATCAAATGGGAATGGGAACGGGAATGGTAACACGAAGCAAAGCTATTCGTATTCTGGAATTAACATGAAGGGAAGGGAACTTGAGGATGATGCCAGTAAGGCTCACATGAAGGCAATGGCAGCAAAGGCTCTTAGGTATTTAGCAAAGGGTAACTCGGGGATTTGTCGTAGCATAACAGAATCAAGGGCTTTGTTATGCTTTGCGATTCTACTTGAGAAAGGACCTGAAGAAGTGAAGTATAATTCTGCTTTGGCGTTGAAAGAGATTACTGCAGTGGCTGAGGAAGATCCTGAGTTGAGACGATCGGCGTTCAAACCTAACACTCCAGCTTGTAAAGCGGTTGTTGATCAAGTGATTGATATTATCGACAAAGAAGATAAGAGACTCTTGATTCCTTGTATCAAGGTTATTGGAAGTTTGGCAAGGACGTTCAGGGCAACTGAGACAAGGATTATTGGTCCGTTGGTTCGACTTCTTGACGAAAGAGAGGCTGAAGTATCAAAAGAGGCTGCAGACTCACTTGCAAAATTCGCCTGCAATGATAACTATCTCCACCTTGATCACTCTAAGGCAATTATAAGCTTTGGTGGTGCAAAACACTTGGTTCAGCTTGTGTATCTTGGGGAGCAACCAGCAGTTCAACATTCTGCCTTGGTTCTGCTATCCTATATTGCATTGCATGTGCCAGACAGCGAAGAACTTGCTCGAGCCGAGATTCTTGGAGTTCTTGAATGGGCGTCCAAGCAACCTAACATGACTCAGCATGAAACCATTGAGGCATTGTTGCAAGAATCCAAGAGTAGGCTTGAGCTTTACCAGTCTAGAGGTTCAAGAGGGTTCCAAAAACTACATCAATAA 2034 0.4105 MADIVKQLLAKPIQLADQVSKAAEEGSSSFKSECLELKSKTEKLASLLRQAARSSSDLYERPTRRIIGDTEQVLEKALTLVLKCKVNGLMKRVFSIVPSAAFRKMSSHLENSIGDVSWLLRVSAPAEEGSYECLGLPPIASNEPILGLIWEQIAILHNGSFDDRSDAAASLVSLVRDNDRNGKLIIEEGGVGPLLKLLKEGKKEGQENAAKAIGLLGRDAESVEVMIHAGVCSVFAKILKEGPMKVQAVVAWAVSELVSKYPKCQDVFAQHNIVRLLVSHIAFETVQEHSKYAIVSNKPNSIHAVVMASSNGAAAVGNNGDMSGSNDVKKETEDEVKIRMNHPLGDRSTNQMHKVVTSTMAKHAASANSNKNQKTDESGEAGLNSHSQVAGQSNGNGNGNGNTKQSYSYSGINMKGRELEDDASKAHMKAMAAKALRYLAKGNSGICRSITESRALLCFAILLEKGPEEVKYNSALALKEITAVAEEDPELRRSAFKPNTPACKAVVDQVIDIIDKEDKRLLIPCIKVIGSLARTFRATETRIIGPLVRLLDEREAEVSKEAADSLAKFACNDNYLHLDHSKAIISFGGAKHLVQLVYLGEQPAVQHSALVLLSYIALHVPDSEELARAEILGVLEWASKQPNMTQHETIEALLQESKSRLELYQSRGSRGFQKLHQ* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4273 677 Pfam Armadillo/beta-catenin-like repeat 183 215 IPR000225 GO:0005515
Tpr4g4273 677 PANTHER - 1 672 - -
Tpr4g4273 677 MobiDBLite consensus disorder prediction 359 402 - -
Tpr4g4273 677 SMART arm_5 443 483 IPR000225 GO:0005515
Tpr4g4273 677 SMART arm_5 219 259 IPR000225 GO:0005515
Tpr4g4273 677 SMART arm_5 577 618 IPR000225 GO:0005515
Tpr4g4273 677 SMART arm_5 177 218 IPR000225 GO:0005515
Tpr4g4273 677 Gene3D - 417 663 IPR011989 -
Tpr4g4273 677 PANTHER ARMADILLO REPEAT ONLY 4 1 672 - -
Tpr4g4273 677 SUPERFAMILY ARM repeat 153 645 IPR016024 -
Tpr4g4273 677 Gene3D - 150 315 IPR011989 -
Tpr4g4273 677 Gene3D - 3 122 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4273 Tpr-Chr4 49905534 49908510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4273 147 281 U-box Gene Family AT3G46510 31.111 5.44e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4273 - - mtr:MTR_8g075770 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4273 4 49905534 49908510 Tpr4g4273 4 49905534 49908510 ECH
Tpr2g1104 2 12962884 12965560 Tpr4g4273 4 49905534 49908510 PCT