Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4272 ATGTTGTTTTCCATTCCATTTATTGTTGTCTTTTCAAGTCTTTGTTTGTTAACGAAGCAAACAGAAATTAAAGAGAGCGATGCAGAGATCTCTTTGGGTCATAATATTGAACAAGGGGGCTATGTTGAAGAACCTATCTTGAATTCTCAAAGCAAGGAAATATATAAGGAGTGTCTTAAAAATCATGCTTCAAGCATTGGGGGCTATGCTCTCGATGGTTGTTGCGAGTTTTTACCTGCTGGAATCAAAGGTACTTCTGAATTTTTCAGATGTGCCGCATGTGGTTGTCATAAAAACTTTCATCGTAAAGTAACTATTGCTAGAGAACCAACTCATTTCCTATTCAAAACCACCTATAGTCCTCAGCCAACTCCCATCTCGATAGTCCCTCAGACTACAAATGGTTACCGCCATGCAACTGGGCCATCGAGCGGGTCCACAACATCCCTTGCTTTTCCTTCTACAATTATCCATGATGGGGTCGTCGAAGGTTCTTCGAGCTCTAAAAAAAGGTTTAGAACTAAATTTACGCCAGAACAAAAGGAGAATATGTTGAATTTTGCTGTAAAAATAGGTTGGAGAATTCAGAAACATGATCAAGAAGTTGTAGAGCATTTTTGTAACAAAATTGGGGTTAAGTATCATGTTTTTAAAGTTTGGATGCTAAACAATAGGAACACCGTTGGAAAAAAGCATTAG 699 0.382 MLFSIPFIVVFSSLCLLTKQTEIKESDAEISLGHNIEQGGYVEEPILNSQSKEIYKECLKNHASSIGGYALDGCCEFLPAGIKGTSEFFRCAACGCHKNFHRKVTIAREPTHFLFKTTYSPQPTPISIVPQTTNGYRHATGPSSGSTTSLAFPSTIIHDGVVEGSSSSKKRFRTKFTPEQKENMLNFAVKIGWRIQKHDQEVVEHFCNKIGVKYHVFKVWMLNNRNTVGKKH* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4272 232 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 55 103 IPR006456 -
Tpr4g4272 232 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 169 225 IPR006455 -
Tpr4g4272 232 Pfam ZF-HD protein dimerisation region 54 105 IPR006456 -
Tpr4g4272 232 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Tpr4g4272 232 Gene3D - 158 230 - -
Tpr4g4272 232 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 231 - -
Tpr4g4272 232 SUPERFAMILY Homeodomain-like 163 230 IPR009057 -
Tpr4g4272 232 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 48 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4272 Tpr-Chr4 49893957 49894655 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4272 55 228 ZF-HD Transcription Factor Family AT4G24660 46.961 5.35e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tpr4g4272 ZF-HD_dimer 1.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4272 - - mtr:MTR_8g069080 241.121