Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4271 ATGCTCTCAGTTTCTTTTCCCACATCTCTCAGCACCGCCGTCAATTTCGCCGGCAAAACCATCTCATCACAACCGTGCCACGTCAGATCCCGGCGAATTCTAATTTCTGCCACAGCCACCGCAACTGAAGCTACCTCTACTAAGCTTTCTCACGCTATGGTTTCATCTTCATGCACGTCGCTGTATGAGATTCTTGGAATTGCGACCGTTGCTTCTGATCAGGAGATTAAGGCAGCTTACCGGCGACTCGCGAGAGTTTCACATCCTGACGTGGCGACGGTTGATCGGAAAGATTCGTCGGCGGATGAGTTCATGAAGATTCGTGATGCGTATTCTACGTTGTCAGATCCTGAGAAGCGAGCTAGCTATGATAGAAGCTTGTTCCGGCGTCAGCAACCGCTTACGGCGATGAGATTTTCTGGACATGGTTGTCGGAACTGGGAAACGGATCAGTGCTGGTAG 462 0.5065 MLSVSFPTSLSTAVNFAGKTISSQPCHVRSRRILISATATATEATSTKLSHAMVSSSCTSLYEILGIATVASDQEIKAAYRRLARVSHPDVATVDRKDSSADEFMKIRDAYSTLSDPEKRASYDRSLFRRQQPLTAMRFSGHGCRNWETDQCW* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4271 153 CDD DnaJ 62 116 IPR001623 -
Tpr4g4271 153 SUPERFAMILY Chaperone J-domain 55 132 IPR036869 -
Tpr4g4271 153 Gene3D DnaJ domain 46 140 IPR036869 -
Tpr4g4271 153 ProSiteProfiles dnaJ domain profile. 60 127 IPR001623 -
Tpr4g4271 153 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 3 153 - -
Tpr4g4271 153 SMART dnaj_3 59 119 IPR001623 -
Tpr4g4271 153 PRINTS DnaJ domain signature 62 80 IPR001623 -
Tpr4g4271 153 PRINTS DnaJ domain signature 80 95 IPR001623 -
Tpr4g4271 153 PRINTS DnaJ domain signature 99 119 IPR001623 -
Tpr4g4271 153 ProSitePatterns Nt-dnaJ domain signature. 104 123 IPR018253 -
Tpr4g4271 153 Pfam DnaJ domain 61 124 IPR001623 -
Tpr4g4271 153 PANTHER - 3 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4271 Tpr-Chr4 49853334 49854161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4271 62 124 C2H2 Transcription Factor Family AT1G74250 43.284 2.75e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4271 - - cam:101494220 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4271 4 49853334 49854161 Tpr4g4271 4 49853334 49854161 ECH
Tpr2g1103 2 12946743 12947591 Tpr4g4271 4 49853334 49854161 ECH