Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4267 ATGGCGGATGTTATGGTAATGAAAGAGATTGAAGACAAAGCCTCACGTCTCGGAATCGATCTATCTACCATAAATCTTGATTCCATTCACCTCCCACCGGGTGACGACGACTGTGGAATCATCATTGATGACGAGGATATTCTTCAAGAAGAAAATTCTGGTTCGTTTAATACTGGTAATTTAGGGAACATTATAGTAGTGGACAATCTTCCCGTTGTTCCGAAGGAAAAGTTTGAGAAGCTTAAAGGCTCTGTCCGGAAACTTTACAGTCAGATTGGTGTTATGAAGGATGATGGTCTCTGGATGCCGGTTGATCGTGCCACCGGACAGTCCTTAGGTTACTGTTTTATTGAGTACAATACTTCTCAAGAAGCTGAGCTTGCTAAAGAGAAGACTCATGGATACAAATTCGATCGTTCTCACGTATTATTTGCTGGGAGCATGTTCGATGATTTTGATCGGGCCATGAATGTGCCTTATGAATGGGCTCCTCCACCATACAAGGAATATACTCCAAGGGAAAATCTCCAACAATGGCTTACTGATGCTAAGGGCAGAGACCAGTTTGTGATGCTTGCTGGGAATGATATTGAGGTTTCCTGGAATGATGCTCGACGATTAAAACCCGATCCTGTTTACAAACATGGAAATTGGACTGAGAGTTTTGTACAATGGTCACCTTTGGGCACATATTTGGCAACAGTTCAACGGCAGGGTGTGGTAGTCTGGGGAGGTGCTACAACTTTCAATCGTCTCATGCATTACGCTCATCCTCAGGTAAAGCTTATTGACTTTTCACCTGGTGAGAAGTATTTGGTAACTTATAGCAGCCATGAACCGAGCAACAGTCGAGATGCTAATAGGGTTGTGATAAATATATTTGATGTGAGGACTGGTAAATTGATGAGAGACTTTAAAGGAAGTGCTGATGATTTTTCTGTTGGAGGTACCGGGGGTGTCATGGGAATGTCATGGCCTGTATTCAAATGGAGTGGCGGAAGAGATGATAAGTACTTTGCAAGGATGAGGAAAAATGTACTTTCTGTATATGATACAGAAACATTTTCTCTTGTTGACAAAAAATCCATAAAGGTTGAAAATATAATCGATTTCTGCTGGTCGCCAACTGATCCAATCATTTCACTGTTTGTTCCGGAGACAGGAGGCGGTAACCAGCCAGCTAGGGTAAGTCTTGTTCAAATCCCCAGCAAAGAAGAACTCAGGCAAAAGAACCTTTTTAGTGTTAGTGACTGCAAGATGTACTGGCAGAGCAATGGGGATTACCTTGCTGTTATTGTAGATCGATATACGAAAACAAAGAAAAACACTTGCACAGGCTTTGAGCTTTTCCGTATAAAGGAACGTGACATACCAATTGAAGTTCTGGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCTTGGGAGCCAAAGGGACATAGGTTTGCTGTTATTCATGGTTATATGCCTAAGCCTGATATTAGTATCTACTCTATGCGGACTGCTCAGAACACTGGCCGAGTTTCAAAGCTCACTACTCTGAAAGGCAAGCAGGCAAATGCTTTGTTTTGGTCACCTGTAGGTCGCTTCATTGTACTAGCAGGGTTGAAAGGTTTGAACGGACTGTTGGAATTTTACGATGTTGATGATCTCGAAACCATGGCTAATACAGAACATTTTTATGCAACTGATGTTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCTGTGACTCATCATGATAATATGGAAAATGGATTCAACATATGGTCTTTCAATGGCAAACATCTGTATCGGATATCGAAGGATAGCTTATATCAGCTCTTATGGAGACCAAGACCAGCATCTTTCTTGACTGCTGAGAAAGAGGAAGAGATTGCAAAGAACTTGAAGAAGTATAGTAAGAAATATGAAGCTGAAGATCAAGATGTTTCATTGCTGCTGAGTGAGCAGGAGCAAGAGAAGCGCAAGATCTTGAAAGAAGATTGGGAGAAATGGGTTAATCAATGGAAGCAGTTGCATGAAGAAGAGATGTCAAAGAGGCAAGAGCTGATTAACGGCAAAGCTAGTGACGAGGAAGAAGAATATGAAGCCAAGGACATTGAAGTCGAGGAAGTAGTCGATGTTTCCAAAGAGATCCTTCACTTTGAGTATGGTCAAGAGTTGAGGTAG 2178 0.4174 MADVMVMKEIEDKASRLGIDLSTINLDSIHLPPGDDDCGIIIDDEDILQEENSGSFNTGNLGNIIVVDNLPVVPKEKFEKLKGSVRKLYSQIGVMKDDGLWMPVDRATGQSLGYCFIEYNTSQEAELAKEKTHGYKFDRSHVLFAGSMFDDFDRAMNVPYEWAPPPYKEYTPRENLQQWLTDAKGRDQFVMLAGNDIEVSWNDARRLKPDPVYKHGNWTESFVQWSPLGTYLATVQRQGVVVWGGATTFNRLMHYAHPQVKLIDFSPGEKYLVTYSSHEPSNSRDANRVVINIFDVRTGKLMRDFKGSADDFSVGGTGGVMGMSWPVFKWSGGRDDKYFARMRKNVLSVYDTETFSLVDKKSIKVENIIDFCWSPTDPIISLFVPETGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVIVDRYTKTKKNTCTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGYMPKPDISIYSMRTAQNTGRVSKLTTLKGKQANALFWSPVGRFIVLAGLKGLNGLLEFYDVDDLETMANTEHFYATDVEWDPTGRYVATAVTHHDNMENGFNIWSFNGKHLYRISKDSLYQLLWRPRPASFLTAEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEQEKRKILKEDWEKWVNQWKQLHEEEMSKRQELINGKASDEEEEYEAKDIEVEEVVDVSKEILHFEYGQELR* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4267 725 SUPERFAMILY DPP6 N-terminal domain-like 220 603 - -
Tpr4g4267 725 SMART rrm1_1 64 146 IPR000504 GO:0003723
Tpr4g4267 725 SUPERFAMILY RNA-binding domain, RBD 61 140 IPR035979 GO:0003676
Tpr4g4267 725 Gene3D - 395 636 IPR015943 GO:0005515
Tpr4g4267 725 PANTHER BNACNNG51870D PROTEIN 5 716 - -
Tpr4g4267 725 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 42 717 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tpr4g4267 725 Coils Coil 622 642 - -
Tpr4g4267 725 Pfam Eukaryotic translation initiation factor eIF2A 410 610 IPR013979 -
Tpr4g4267 725 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 716 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tpr4g4267 725 PIRSF Transl_init_eIF3b 6 717 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tpr4g4267 725 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 163 IPR000504 GO:0003723
Tpr4g4267 725 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 139 IPR000504 GO:0003723
Tpr4g4267 725 Gene3D - 62 144 IPR012677 -
Tpr4g4267 725 Gene3D - 182 387 IPR015943 GO:0005515
Tpr4g4267 725 CDD RRM_eIF3B 62 145 IPR034363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4267 Tpr-Chr4 49793971 49796651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4267 5 717 Eukaryotic Initiation Factors Gene Family AT5G27640 71.569 0.0 1072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4267 K03253 - gmx:100817394 1192.56