Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4251 ATGAGAACTCGAAATGCTGATTCATCTTCCAAATCCACAATCCCTAAAAAGTCACCGCCGGCGATAAAATCCGCCGGAGTATCTCCCGCCGCAAAGCGCGCATTTACGTCCAAAGTCAGAAACGCTAAGAAGCTGGAAACATCGCCCGCAACCGATCCGGATCAATCTCAGAAGCAGAACTTATTATCTGTAAAGAGGAAAACACCAACGAAACCGAGAACAAAAATGGTTACCGACACTCCAAATGTGGAAGAGCAATTGGAGGCTGAAGTTGTTGAAACTACAGTTGTAGATGATCATGAGGCAGCAGAGAGAGTGGAAGAAGCTGGAAATGTTAAGGACATTGATGTAGATAATATTGAGAGTGAGAAAGAGGGGGAACAGAAGCCCATGGAAGTGGATGAACCTGTTGTTGGAAAAGTTTGTGAATTGGTCGAAAAGGGAAAGAGCATGGAAGACGTCGAACCAGTTGTTTCTCAGGATGCTTCTCTTTCTTTTAAACAACCGGGTTGCACCGTTGTGGACCTCAATATATCTGTGAACGATAATGAAGATTATACTGGTGCAAAGGAGGGAGGTGAAGAGTTGAAAGAGGAAGAGTTGAGTGTGGGAGAGAGAGGAAAGGAAGAGTTGAAAGCACAGGATGGAGAAAAAGGAAAGGAAGAGTTGAAAGAACAGGGAGGAGATAAGGAAATGGAAGAGTATCATATACAGGAAGGAGAAAAAGGACAGAAAGAGCTGAAAGAACAGGAAGCAAAGAAAGGAAAAGAAGAGTTGAAGGAGCATAAAGAAGAGAAAGGAAAGGAAGTGTTAAAAGAACCAGTAGGAGAGAAAGAAAAAGAAGAGTTGAAAGAACATGAAGGAGAGAAAAGAAAGGAAGAGTTTAAAGTAGAGGAGATAGAAATAGCAAAAGGAGAGGAAACAAACATTATTGGACATGAAGAGCACTCTAGTGTAGAAGTACAAGTCCAGCTGCAAAAAGATGTTGATCCCAAAAATTATGGTGTTGAAGGGCCAAAGAGTGATGAATTAATAGATCTTGGAGAACAAGGGAGGGTGGAGCTTGAGGAGGAAGATCTAGAGGAAGATCCAGAAGAAGATCTGGAGGAACCGCCCAAAGAAACTGAGACATTGGATGAAGAGCATATGGAATTTGAAGCCGTTGCAAAGGAGCGAAAGATTATGAAAGAGCATGAGATATTTGTTGGTGGATTGGATCGTGAGGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGATAGTGGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAATAAGGTCTATGCTTTTGTAAAGTTTGCTAGTAAGGAGCATGCAAATAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGAAAACGATGTGGCACCGCACCTAGTGAGGATAATGACACATTATTCTTAGGAAATATTTGCAATACATGGACAAAAGAAGATATTAAACAGAAGCTGAAGGATTATGGTGTAGAAGGAGTTGAAAGCATTACAGTTGTACCAGATGTTCAACATGAAGGCTTGAGCCGGGGTTTTGCATTCCTTGAGTTTTCTTGTCATGCTGATGCCATGCTGGCATACAAGAGGCTTCAAAAGCCTGATGTCATCTTTGGTCATGCTGAGCGAACTGCTAAGGTAGCCTTTGCCGAACCGATACATGAACCAGACTCAGAGATAATGGCACAAGTCAAGTCTGTGTTTATTAACGGTCTCCCTCTTGACTGGGACGAAGATCATGTGAGGGAGCTATTGAAATCGTATGGTGAAATTGTAAGAATTGTTTTGTCAAGGAATATGGCCACAGCTAAGAGGAAGGATTATGGATTTGTCGATTTTTCCACACATGAAGCTGCTTTAGCTTGTGTTGACGGTGTAAATAAATCAGAATTGGGAGATGGGAAATCAGAGATAAAAGTGAGTGCTAGGCTTTCAAAACCTTTGCCTAAAATGCAGGCTGTTAAAGGTGGCATGTGCGGTGACCTCCGCATTGGTCAGGCTAGGAGTGAAGCCTACCCAAGATCTGAAAGGGGTTTTGGGCGTGGGCGCGGAAGACAGCTGCTCAACAACAGGGGAAATTTCAACAGGGGCAGGGGTTTCTATCATCATGGGGTGCGCAGTCAAATTGGAAGAATGGGTTTTCCGGATGACCCTGATTTTAGTATGCATCCGGATTTTCATCAGTGGCAATTTGGTCCACGAGGAGCTATGAGGGGTGGATATTATGCAGGTAGTCGAGGTGGTGCTCCATTTGTTGGTCCATCTAGACATTATCATGATAGAGCATGGCATGGTATCCCTGATGGAGGCCCCGGTGAGCCTCTTCCTCCAAGAAGGCCCTACTCTTCAGGTGGACAGTTTTATGGTATCCCTGATGGAGGCCCCGGTGAGCTTTTTCCTCCAAGAAGGCCCTACTCTCCAGGTGGACAGTTTTATGGTATCCCTGATGGAGGCCCTGGTGAGCCTATTCCTCCAAGAAGGCCCTACTCTCCAGGTGGACAGTTTTATGGTATCCCTGATGGAGGCCCTGGTGAGCCTATACCTCCAAGAAGGCCATACTCTCCAGGTGGACAGTTTGACATGCCTTTTATGGGAAGGCATGTTGATGATCCATATCTATATGATGACAATATGCGTGGAATCAAACGTCCACTTTATATGACTGACCCTGAACCTGATTACATGGGGCCCAATAGACTTCGCCCCCGATTTGATTATGCAGATCCATCTATGTTTCACGGAACTCGTTACCATGATTATGCTGGGGCTGGCAGCAGACCGTACCCACAGGACTATTATGGTTCTAATCATGGTGGAGGTCCATACTCATCTTTTAATGGATGCGATGGCCCACATGGACACAGACACTACTATTAG 2910 0.4423 MRTRNADSSSKSTIPKKSPPAIKSAGVSPAAKRAFTSKVRNAKKLETSPATDPDQSQKQNLLSVKRKTPTKPRTKMVTDTPNVEEQLEAEVVETTVVDDHEAAERVEEAGNVKDIDVDNIESEKEGEQKPMEVDEPVVGKVCELVEKGKSMEDVEPVVSQDASLSFKQPGCTVVDLNISVNDNEDYTGAKEGGEELKEEELSVGERGKEELKAQDGEKGKEELKEQGGDKEMEEYHIQEGEKGQKELKEQEAKKGKEELKEHKEEKGKEVLKEPVGEKEKEELKEHEGEKRKEEFKVEEIEIAKGEETNIIGHEEHSSVEVQVQLQKDVDPKNYGVEGPKSDELIDLGEQGRVELEEEDLEEDPEEDLEEPPKETETLDEEHMEFEAVAKERKIMKEHEIFVGGLDREATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKVYAFVKFASKEHANKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEDIKQKLKDYGVEGVESITVVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIHEPDSEIMAQVKSVFINGLPLDWDEDHVRELLKSYGEIVRIVLSRNMATAKRKDYGFVDFSTHEAALACVDGVNKSELGDGKSEIKVSARLSKPLPKMQAVKGGMCGDLRIGQARSEAYPRSERGFGRGRGRQLLNNRGNFNRGRGFYHHGVRSQIGRMGFPDDPDFSMHPDFHQWQFGPRGAMRGGYYAGSRGGAPFVGPSRHYHDRAWHGIPDGGPGEPLPPRRPYSSGGQFYGIPDGGPGELFPPRRPYSPGGQFYGIPDGGPGEPIPPRRPYSPGGQFYGIPDGGPGEPIPPRRPYSPGGQFDMPFMGRHVDDPYLYDDNMRGIKRPLYMTDPEPDYMGPNRLRPRFDYADPSMFHGTRYHDYAGAGSRPYPQDYYGSNHGGGPYSSFNGCDGPHGHRHYY* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4251 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 576 656 IPR000504 GO:0003723
Tpr4g4251 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 398 476 IPR000504 GO:0003723
Tpr4g4251 969 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 400 468 IPR000504 GO:0003723
Tpr4g4251 969 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 578 644 IPR000504 GO:0003723
Tpr4g4251 969 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 480 548 IPR000504 GO:0003723
Tpr4g4251 969 MobiDBLite consensus disorder prediction 352 374 - -
Tpr4g4251 969 SMART rrm1_1 399 472 IPR000504 GO:0003723
Tpr4g4251 969 SMART rrm1_1 577 650 IPR000504 GO:0003723
Tpr4g4251 969 SMART rrm1_1 479 556 IPR000504 GO:0003723
Tpr4g4251 969 MobiDBLite consensus disorder prediction 187 292 - -
Tpr4g4251 969 MobiDBLite consensus disorder prediction 1 82 - -
Tpr4g4251 969 MobiDBLite consensus disorder prediction 333 351 - -
Tpr4g4251 969 Gene3D - 563 718 IPR012677 -
Tpr4g4251 969 SUPERFAMILY RNA-binding domain, RBD 568 662 IPR035979 GO:0003676
Tpr4g4251 969 MobiDBLite consensus disorder prediction 41 67 - -
Tpr4g4251 969 MobiDBLite consensus disorder prediction 94 135 - -
Tpr4g4251 969 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 871 962 - -
Tpr4g4251 969 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 281 732 - -
Tpr4g4251 969 SUPERFAMILY RNA-binding domain, RBD 399 543 IPR035979 GO:0003676
Tpr4g4251 969 MobiDBLite consensus disorder prediction 185 292 - -
Tpr4g4251 969 Coils Coil 283 303 - -
Tpr4g4251 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 478 563 IPR000504 GO:0003723
Tpr4g4251 969 Gene3D - 340 476 IPR012677 -
Tpr4g4251 969 Gene3D - 477 562 IPR012677 -
Tpr4g4251 969 MobiDBLite consensus disorder prediction 325 380 - -
Tpr4g4251 969 CDD RRM_SF 578 652 - -
Tpr4g4251 969 CDD RRM_SF 480 543 - -
Tpr4g4251 969 PANTHER NUCLEOLIN-LIKE ISOFORM X1 871 962 - -
Tpr4g4251 969 PANTHER NUCLEOLIN-LIKE ISOFORM X1 281 732 - -
Tpr4g4251 969 CDD RRM_SF 400 468 - -
Tpr4g4251 969 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4251 Tpr-Chr4 49661239 49668659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4251 399 644 Eukaryotic Initiation Factors Gene Family AT2G23350 22.568 4.24e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4251 - - gmx:100784338 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4251 4 49661239 49668659 Tpr4g4251 4 49661239 49668659 ECH