Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4250 ATGATGGAGTCATGTGTCCCACCTGGATTTCGGTTTCATCCAACTGATGGAGAGCTTGTTGGTTACTATCTTAGAAAGAAAGTAGCTTCTCATAAGATTGATCTTGATGTTATCAAAGAGGTCGATTTATATCGTATCGAACCATGGGATCTTCAAGGAAGATGCAGAATTGGGAATGAGGAGCAACATGAGTTTTATTTTTTTAGTCACAAAGACAAGAAATATCCAACGGGGACAAGAACAAACAGAGCTACAATGGCCGGGTTCTGGAAAGCAACCGGAAGAGATAAGTCGGTTTATGAACGAACAAAACTGATCGGAATGAGAAAGACGCTTGTTTTCTATAAAGGAAGAGCCCCTAATGGACAGAAAACTGATTGGATCATGCATGAGTATAGGCTTGAAACAATAGAAAATGCACCTCCACAGGAGGAAGGTTGGGTTGTATGCAAAGCATTCAAGAAAAAAACCAATGTCCAAACAAAGGCTAATGAAAGATGGGATCAACAAACAAGTGGCATTATCTCAAAGGTAGACCCTATTCATGACCTTACCTTATGTCAACCTCATAGGATTCCACCTCAAAATTTCATGTACAAACAAGAGATAGAAGCAGATAATGCCATATTAAGCTTCATGCATTCAGAACATTTGTTACCTCTTCCTCATCTAGAATGTCCCTCTATGGCAAAGAGACAAAACACAATGTCAATAATATCTGAAAATAACATTAACAATAATGATTTTCAAAATGGATTATTGTCCAACATTAACAAAACGGAGAAAGTGACTGATTGGAGGGCTTTAGATAAGTTTGTGGCTTCTCAATTGAGTCAAGAAGATCATAGGCATGACACAAGCTCAGATATGTCATTGTTGCTACTTCAAAGTAGTAGAGATGAAGAGAACAAGTTAAGCTCATTTTTAAGTACAAGCTTAGATTGTGATTTTGGGATATGTGTATTTGAACATTAA 975 0.3733 MMESCVPPGFRFHPTDGELVGYYLRKKVASHKIDLDVIKEVDLYRIEPWDLQGRCRIGNEEQHEFYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETIENAPPQEEGWVVCKAFKKKTNVQTKANERWDQQTSGIISKVDPIHDLTLCQPHRIPPQNFMYKQEIEADNAILSFMHSEHLLPLPHLECPSMAKRQNTMSIISENNINNNDFQNGLLSNINKTEKVTDWRALDKFVASQLSQEDHRHDTSSDMSLLLLQSSRDEENKLSSFLSTSLDCDFGICVFEH* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4250 324 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Tpr4g4250 324 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Tpr4g4250 324 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 296 - -
Tpr4g4250 324 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Tpr4g4250 324 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Tpr4g4250 324 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 4 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4250 Tpr-Chr4 49651121 49657462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4250 2 324 NAC Transcription Factor Family AT2G18060 56.164 6.16e-131 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr4g4250 NAM 4.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4250 - - aprc:113869508 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4250 4 49651121 49657462 Tpr4g4250 4 49651121 49657462 ECH
Tpr2g1077 2 12666376 12671613 Tpr4g4250 4 49651121 49657462 PCT