Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4239 ATGGAATGTGTGAAAACAGCAGAAACAGCTTTAAAAAGCAGTTTCACCATAACCACAACCATGAAACTCACTCCACAAACTTTGTTAGAAGAATTATCTTCTTCTAATGTCCAAGACATAGCTCCTATCGATGATTTCTTTGTCGATGATTTCCTTAACTTTTCCAACGAAGAACAAGAACAAGAACAAGAACAACAAAACATTCTAGAAGAAAAACAACAAAACATTCTAGAAGAAAAACAACAAAACCAAACCCCTCAACAAAATACCCAAAATCAAAACGAAATTTCTCACCCATTAATCAACGACCATTTTTCTTCATTACCCACTTCCGAACTCACCGTTCCGGTAGAAGAAGCTGCTGATTTAGAATGGTTATCATATTTCGTTGAAGATTCATTCTCAGAATTTGCCATAACAGAAAATCTTCAAGAAAAAGCTTCTGAACAAAAACCCACGTTTTCAACGCCGTGTTTCAAACCTCCGGTACCGGCGAAAGCAAGAAGCAAAAGAACAAGAACCGGTGTTCGTGTATGGCCAATTTCGTTAATGGATTCATCTTCAACTTCTAGCTCAACTACCCTTTCTTCTTCATCCTCACACCATGAAGAATGTTCCAAGCCGCCGGAGAAAAAGAAGAGAGTGAGTTTGCCGGACGGAGAAGGGAGAGGTGTGCCTCGGCGGTGTAGTCATTGTGGTGTTACAAAAACTCCTCAGTGGCGAACCGGACCGGTTGGACCCAAAACGCTTTGTAATGCTTGTGGAGTTCGTTATAAATCGGGTCGGTTGTTACCCGAATATAGACCCGCTTGTAGCCCGACTTTTTCGACTGAGTTGCATTCTAATCATCACCGGAAAGTTCTTGAGATGCGGCGGAAGAAGGAGGATGTTCCTGGTTCGCCACTCACTGTTCCCGGTTTTTGA 924 0.4188 MECVKTAETALKSSFTITTTMKLTPQTLLEELSSSNVQDIAPIDDFFVDDFLNFSNEEQEQEQEQQNILEEKQQNILEEKQQNQTPQQNTQNQNEISHPLINDHFSSLPTSELTVPVEEAADLEWLSYFVEDSFSEFAITENLQEKASEQKPTFSTPCFKPPVPAKARSKRTRTGVRVWPISLMDSSSTSSSTTLSSSSSHHEECSKPPEKKKRVSLPDGEGRGVPRRCSHCGVTKTPQWRTGPVGPKTLCNACGVRYKSGRLLPEYRPACSPTFSTELHSNHHRKVLEMRRKKEDVPGSPLTVPGF* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4239 307 MobiDBLite consensus disorder prediction 187 202 - -
Tpr4g4239 307 MobiDBLite consensus disorder prediction 203 225 - -
Tpr4g4239 307 PANTHER GATA TRANSCRIPTION FACTOR 1 296 - -
Tpr4g4239 307 Coils Coil 52 82 - -
Tpr4g4239 307 ProSitePatterns GATA-type zinc finger domain. 229 254 IPR000679 GO:0006355|GO:0043565
Tpr4g4239 307 SMART GATA_3 223 277 IPR000679 GO:0006355|GO:0043565
Tpr4g4239 307 PIRSF Txn_fac_GATA_plant 9 300 IPR016679 GO:0003677|GO:0005634|GO:0045893
Tpr4g4239 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 285 - -
Tpr4g4239 307 Gene3D - 221 296 IPR013088 GO:0006355|GO:0008270
Tpr4g4239 307 ProSiteProfiles GATA-type zinc finger domain profile. 223 259 IPR000679 GO:0006355|GO:0043565
Tpr4g4239 307 MobiDBLite consensus disorder prediction 187 225 - -
Tpr4g4239 307 PANTHER GATA TRANSCRIPTION FACTOR 1 296 - -
Tpr4g4239 307 Pfam GATA zinc finger 229 263 IPR000679 GO:0006355|GO:0043565
Tpr4g4239 307 CDD ZnF_GATA 228 276 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4239 Tpr-Chr4 49525524 49527085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4239 8 295 C2C2-Gata Transcription Factor Family AT5G66320 43.598 3.24e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr4g4239 GATA 1.8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4239 - - cam:101512459 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1061 2 12462194 12463890 Tpr4g4239 4 49525524 49527085 ECH
Tpr4g4239 4 49525524 49527085 Tpr4g4239 4 49525524 49527085 ECH
Tpr2g1061 2 12462194 12463890 Tpr4g4239 4 49525524 49527085 PCT