Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4229 ATGGCTGGTTTATTCTCATTAGGAGGCGGAGGAGGTGGAGGAAGAGGAGGAGAATCAAACCAACAAGGTCATCAGCAAGGTCAAATTACTCCACAAGAAGCTCTACTTTGGTACAACAAAAACGACGACGTTTCATCTTACAGAGGAAATTTAGAATTATGGAACCAACAGCAGCAACACCAGCACCACCACCAGCAGCACCAGAACCAACAACAAGAAGAGGATATGCATGGTGTTAACGTTGCAAGGCCGTTCTTTTCGCGAGATCTCTATGGATTAGGAGTGGGACCCAGTAGGGTTTCATCAGATGATCATTCATCACCAAGATCAGCAGCTGCTGCTTTTAATATGACAGTAAGGTCATCAGCTGGTGGTGGTGGTGGTGTTGTTGAAGGAATAAGCTGTCAAGATTGTGGTAACCAAGCTAAAAAAGATTGTACTCACATGAGATGTAGAACTTGTTGTAAAAGCCGTGGTTTTCATTGTCAAACTCATGTTAAAAGTACTTGGGTACCAGCTTCAAGACGCCGTGAACGTCAACAACAATTAACTTCATCATCTTCTTTACAACAACAACAACAGCAACAGAGAGATATTTCTAAACGACCTAGAGATTCTCTTGTCCCTACTCGCAATTTCCCTTCAGGGTTAGAGGAAGCAAATTTTCCAGCTGTGGTTAGTTCTCCAGCAGAGTTTAGGTGTGTAAGGGTTAGCTCAATTGATGAGGCAGATGATAGGTATGCATATCAAACGGCTGTAAACATTGGAGGGCATTTGTTCAAAGGAATTCTCTATGACTTTGGTCCAGAAACTAGTAGCAACAATAACAACAATAATAATTATAATAGTAGTAATTACATGATTGGGGAGACTTCAGGTGGAAGCGGTGTTGGTGTCGCTCAGCCGTTGAACCTAATCACCGACTCTGATGTCACTGTTGCTGCCTCTTCAGGGGCACTTGTTGATCCTTCTTCATTGTATTCGGCTGCTGCCCCGATTAATGCCTTCATGACGGCTAGTGGTACGCAATTCTTCCCTCGCCCGAGATCTTGA 1053 0.4359 MAGLFSLGGGGGGGRGGESNQQGHQQGQITPQEALLWYNKNDDVSSYRGNLELWNQQQQHQHHHQQHQNQQQEEDMHGVNVARPFFSRDLYGLGVGPSRVSSDDHSSPRSAAAAFNMTVRSSAGGGGGVVEGISCQDCGNQAKKDCTHMRCRTCCKSRGFHCQTHVKSTWVPASRRRERQQQLTSSSSLQQQQQQQRDISKRPRDSLVPTRNFPSGLEEANFPAVVSSPAEFRCVRVSSIDEADDRYAYQTAVNIGGHLFKGILYDFGPETSSNNNNNNNYNSSNYMIGETSGGSGVGVAQPLNLITDSDVTVAASSGALVDPSSLYSAAAPINAFMTASGTQFFPRPRS* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4229 350 PANTHER PROTEIN SHORT INTERNODES 1 348 - -
Tpr4g4229 350 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 348 IPR007818 GO:0003700|GO:0006355
Tpr4g4229 350 MobiDBLite consensus disorder prediction 172 197 - -
Tpr4g4229 350 Pfam Domain of unknown function (DUF702) 132 270 - -
Tpr4g4229 350 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 134 176 IPR006510 -
Tpr4g4229 350 MobiDBLite consensus disorder prediction 172 207 - -
Tpr4g4229 350 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 222 269 IPR006511 -
Tpr4g4229 350 MobiDBLite consensus disorder prediction 56 75 - -
Tpr4g4229 350 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4229 Tpr-Chr4 49393719 49396750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4229 1 350 C2H2 Transcription Factor Family AT3G51060 46.348 9.22e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Tpr4g4229 DUF702 7.8e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4229 - - gmx:100781981 345.51