Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4217 ATGGCTGAACAAACTGAGAAAGCTTATCTCAAGCAACGTAATGTGTTTTTAAGTTCGAAGAAATCTGGTAAGGGTAAGAGGCCTGGAAAAGGTGGAAATCGCTTTTGGAAAGCTATTGGTCTTGGATTCAAGACTCCCAGAGATGCAATTGAAGGAACCTATATTGACAAGAAGTGCCCATTCACTGGCAATGTTTCCATCAGGGGTCGTATCTTATCTGGAACTTGTCACAGTGCTAAAATGAATAGGACTATTGTTGTTAGGAGGAATTACCTTCACTTTATTAAGAAGTACCAGAGGTATGAGAAGAGACATTCAAACATTCCTGCTCATGTATCACCTTGCTTCCGTGTTAAGGAAGGAGACCATGTTATTATCGGCCAATGCAGGCCACTCTCCAAGACGGTGAGGTTCAACGTGTTGAAAGTGATCCCAGCTGGATCATCTAGTGGTGCAGGAAAGAAGGCTTTTACTGGAATATGA 483 0.4224 MAEQTEKAYLKQRNVFLSSKKSGKGKRPGKGGNRFWKAIGLGFKTPRDAIEGTYIDKKCPFTGNVSIRGRILSGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGI* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4217 160 SUPERFAMILY Nucleic acid-binding proteins 68 150 IPR012340 -
Tpr4g4217 160 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tpr4g4217 160 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tpr4g4217 160 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tpr4g4217 160 TIGRFAM uS17_arch: ribosomal protein uS17 55 143 IPR028333 -
Tpr4g4217 160 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Tpr4g4217 160 Gene3D - 1 158 - -
Tpr4g4217 160 PANTHER BNAA06G38660D PROTEIN 11 159 - -
Tpr4g4217 160 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Tpr4g4217 160 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tpr4g4217 160 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 11 159 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4217 Tpr-Chr4 49268065 49270106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4217 1 160 Cytoplasmic Ribosomal Protein Gene Family AT3G48930 88.750 8.70e-96 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4217 K02949 - fve:101301636 297.36