Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4183 ATGTCATTCAAAAGCATAGTGCGTGAGCTCAAGGGGATAAAAAATGGTATAGGTAGCATATCAAAGCGGGGTTTTGAAAGCAAGCATTGGCTCTGTCGTTCAAAGTCACATGTTGCTCCGGATGTAACTCCAGTCGAACCTATTCAACAGGGACAGTGGGCAAATCTACCACCTGAATTACTTTTGGATATAATCAGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCTCGTGCTGTTGTTGTTTTTTGTGCTTCGGTATGTAAATCATGGAGGTCTGTCACAAAAGATATCATCAAGACGCCTCAGCAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCTGGTCCCCGTGATTATCCGATACAGTGTTTTATTAGGAGGAACCGAGAAACTTCTACATTCGTGCTGTACTTAGGTTTGGTGCCATCGGAGCATGAGAGCAATAAGGTATTATTAGCCGCCAGGAAGATAAGAAGGGCCACAGGCACCGACTTTGTCATATCCTTGGCTACAGATGATTTTTCTCGAGCCAGTAACAAATATGTTGGTAAACTAAGGTCTAATTTTTGGGGAACCAAGTTTGCTATATACGATTGTCAACCTCCACATGATGCTGCAGTTCAACCAAATCGTCAACCAAGTAGGAGATCGCATTCTAAGCAGGTCTCACCAAGAGTTCCAACATGTAGACATCTTGTTAGCACAATTTCCTATGAGCTGAATGCTCTCTGGACTAGAGGGCCAAGAAGAGTGCACTGCATCATGAACTCTATACCTATCTCAGCTATTCAGGAAGGGGGAAACGCCCCAACTCCAACATCCTTACCTCAAATATTCAGTGAACCTTTTCCTCTCTCACCGGCACTGAAAGAAAAGAGTCCAATGCCCGATTCGTACTCTGGCAGCCTATCAGAGCTACCAGAACTAAGCCAAGGATCGACTGATCCCTTGATACTCAAAAACAAGTCTCCGAGATGGCATGAACAGCTCCAGTGTTGGTGCCTAAACTTCATGGGTCGTGTTACAGTTGCATCTGTAAAGAACTTTCAACTTGTAGCTTCTGTTGATTCGTCTCATAATGTTTCACCTGTGGAGCAAGAAAGGGTAATCTTGCAGTTTGGAAAGATTGGGAAAGATATATTCACAATGGACTACTCATACCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTAACAAGCTTTGATACTAAACCCGCCTGTGAATGA 1239 0.4407 MSFKSIVRELKGIKNGIGSISKRGFESKHWLCRSKSHVAPDVTPVEPIQQGQWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCKSWRSVTKDIIKTPQQCGRITFPISLKQPGPRDYPIQCFIRRNRETSTFVLYLGLVPSEHESNKVLLAARKIRRATGTDFVISLATDDFSRASNKYVGKLRSNFWGTKFAIYDCQPPHDAAVQPNRQPSRRSHSKQVSPRVPTCRHLVSTISYELNALWTRGPRRVHCIMNSIPISAIQEGGNAPTPTSLPQIFSEPFPLSPALKEKSPMPDSYSGSLSELPELSQGSTDPLILKNKSPRWHEQLQCWCLNFMGRVTVASVKNFQLVASVDSSHNVSPVEQERVILQFGKIGKDIFTMDYSYPLSAFQAFAICLTSFDTKPACE* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4183 412 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Tpr4g4183 412 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Tpr4g4183 412 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Tpr4g4183 412 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Tpr4g4183 412 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Tpr4g4183 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Tpr4g4183 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Tpr4g4183 412 MobiDBLite consensus disorder prediction 213 229 - -
Tpr4g4183 412 Pfam F-box domain 53 99 IPR001810 GO:0005515
Tpr4g4183 412 ProSitePatterns Tub family signature 2. 397 412 IPR018066 -
Tpr4g4183 412 PANTHER TUBBY-RELATED 1 412 - -
Tpr4g4183 412 Gene3D - 46 100 - -
Tpr4g4183 412 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
Tpr4g4183 412 Gene3D Tubby Protein; Chain A 111 412 IPR025659 -
Tpr4g4183 412 MobiDBLite consensus disorder prediction 208 229 - -
Tpr4g4183 412 SUPERFAMILY Tubby C-terminal domain-like 102 412 IPR025659 -
Tpr4g4183 412 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 412 - -
Tpr4g4183 412 Pfam Tub family 114 407 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4183 Tpr-Chr4 48853832 48857149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4183 1 412 TUB Transcription Factor Family AT2G18280 61.205 1.83e-177 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tpr4g4183 Tub 3.3e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4183 K19600 - gmx:100805380 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4183 4 48853832 48857149 Tpr4g4183 4 48853832 48857149 ECH
Tpr2g0995 2 11911588 11915186 Tpr4g4183 4 48853832 48857149 ECH
Tpr2g0995 2 11911588 11915186 Tpr4g4183 4 48853832 48857149 PCT