Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4181 ATGGGAACTGATAGTTGTGAAGTGGTAGAGACATTACCAGATCCCCGCTCTTTTAAGGTACACCGGAGAATGTGCACAGAACTCAAGAAATTAGTTGATAGAGTGTTAAAGATATCTCCGCAAATAGAGGAAGCACGCCCTCGGTCCTCATCAGGAATACCGGCTCTCGTTTTGCTTACCAGTACACTTGATAAAGCCAAACAACTTCTGCATTATTGTTCTGATTCTAGTAAACTCTACCTGGCTATGACAGGGGAGTCGATACTCTCAAAATGCCAAAAGGCAAGAAAGTCGTTAGAGAAAAGCTTGGTCCAGATTCAGGATATAGTTCCTGTTATGTTGGCTGCAGAGATTTCTTTTATAATTGATGATCTTAGATGCGTGAGCTTTGTCCTGGATTCTGCTGAAGAAGAGGCTGGAAGGGTTATGAGAGAATTGCTCCAGCAAGGTCCTTCAACCTTGGATAACGATTCAAAAGAAAACACAGATGTCAAATCTCTTCAGTTTGCAGCGGCAAGACTTAATATTACATCCGCAACATCCGTCATGATAGAAAGAAGATCTATTAAGAAGTTATTACAAAAAGTTGGACCACAAGAGGAAAACAAAAAGGCGATCTTGACAAATCTGTTGTATCTTGTGATAAAGTATGGAAACTTATTAAACACAGGAGAACAAGTGGAGGTCTATTCTCATCATGAAGAACCAGCGGCAACTGAGAACTCTGGTCATGATTCTTTACGCACCGATCATGTGAATTTGAGGCCATATTTGAACCATGATCAGTATGGAACACGTGTCAGCGAGTTGAGTAGAGTTCCACCCCCGAAGGAATACACTTGTCCGATATCTTTTCGGTTGATGTATGATCCTGTTGTCATTGCTTCAGGAGAAACATATGAAAGGATGTGGATACAGAAATGGTTTGACGAGGGTCATGTTATATGCCCGAAAACTAAAAAGAAACTGCCGCATATGGCAATGACTCCTAATGTCGCTTTAAAGAAAGTAATATCAAACTGGTGCGAAACTAATGGAGTCTCGATTCCTAACCCAAGTAGGCAAGCAGAAGACATTCACTCGTGGGAAGATTCCATCGCTTCCATTAGGAGTTTTGGAAGTTCCATGAATGGTTTGAACTTGCCAATGGATCTTAGTAACATTTCACTTGGATCGTTAGATAACAGTTATAACTCAGACTCCTCACTTGTGAAGGCTAGTCATGGCTTAAATTCGATGTTGATCAACACCAGAAATGGACGTTCTCGCGGGCATCAATCTCATTCACAGATACATGACACATATCTGGTACCCTTGTCTAAACTTCATGAGCATCAATGGGATTCACAATGCCAACTCGTCGAAGATATGAAAAGAGGTTTCAAATGCAATAACCAAGCTTTTAGCTCCGTGTCGTCAGAGAATTTCATTGACCCACTTGTGAGGTTTCTGAGCACTGCGTATGATAAGCACGACACAAAAGCTCTGAGAGGTGGAAGTCAGTTGCTGTTGGAGTTTACAAAGAACTGCAGAAATTGTTTGACAAACTTAAGTGAAGATACATGCAGTATTTTGGCAAGTCTCCTAGAGTCAGACGTGATTGGAGAAGCTCTTGCCATACTGGAAACATTGTCGAACCAGTGGTCCAATAAAGCTAACGTTGCAGCTTCCAGTGCACTAACCTCTATTTCGGAGATCCTTGATTCTGGTAACAAAGAGTACCAACGCAAAGCTATTAGAATAATGTGCAATTTTTCATCCAATACCGAACTTTGTTCTTTCATGGTGTCTCTCGATTGCATCCCAAAAATACTACCATTTTTCGAAGACAAATCCCTTTGGAGAGACTGTATATGTATATTGAAAAACCTCTGTGATAATAAAGATGGTAGGATATCTATTGTTGAAACTAAGGGATGCATGTCTTGTGTTGTTGAGGTACTTGGCTCTGACACCGACGAAGAAAAGGAACCGGCACTAGCTATTGTACTCTCTTTGTGCTCTCAAAGCTTGGAATATTGTGAGCTGGTTATGTACGAGGGTATTATACCATATCTTGTCAATATCTCCAATAAGGGAAACGATAACACAAAGGTGAAAGCGGTTGAACTTCTCCGACTTTTGAGAGAAGTTGAACCAAATCTCAACAACTCTCAAGATTCTAACGAGGATCACTTTGAAGAAAAGAAACCGTCAAAGAAGTCCAACTCAATTTTTAAGAAGCTATCGCAGTTCGGAAAATCAAGTTCAGATTCATCAAATAACAAGAGATGA 2274 0.4059 MGTDSCEVVETLPDPRSFKVHRRMCTELKKLVDRVLKISPQIEEARPRSSSGIPALVLLTSTLDKAKQLLHYCSDSSKLYLAMTGESILSKCQKARKSLEKSLVQIQDIVPVMLAAEISFIIDDLRCVSFVLDSAEEEAGRVMRELLQQGPSTLDNDSKENTDVKSLQFAAARLNITSATSVMIERRSIKKLLQKVGPQEENKKAILTNLLYLVIKYGNLLNTGEQVEVYSHHEEPAATENSGHDSLRTDHVNLRPYLNHDQYGTRVSELSRVPPPKEYTCPISFRLMYDPVVIASGETYERMWIQKWFDEGHVICPKTKKKLPHMAMTPNVALKKVISNWCETNGVSIPNPSRQAEDIHSWEDSIASIRSFGSSMNGLNLPMDLSNISLGSLDNSYNSDSSLVKASHGLNSMLINTRNGRSRGHQSHSQIHDTYLVPLSKLHEHQWDSQCQLVEDMKRGFKCNNQAFSSVSSENFIDPLVRFLSTAYDKHDTKALRGGSQLLLEFTKNCRNCLTNLSEDTCSILASLLESDVIGEALAILETLSNQWSNKANVAASSALTSISEILDSGNKEYQRKAIRIMCNFSSNTELCSFMVSLDCIPKILPFFEDKSLWRDCICILKNLCDNKDGRISIVETKGCMSCVVEVLGSDTDEEKEPALAIVLSLCSQSLEYCELVMYEGIIPYLVNISNKGNDNTKVKAVELLRLLREVEPNLNNSQDSNEDHFEEKKPSKKSNSIFKKLSQFGKSSSDSSNNKR* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4181 757 MobiDBLite consensus disorder prediction 716 757 - -
Tpr4g4181 757 SUPERFAMILY ARM repeat 440 715 IPR016024 -
Tpr4g4181 757 MobiDBLite consensus disorder prediction 721 735 - -
Tpr4g4181 757 SUPERFAMILY RING/U-box 269 351 - -
Tpr4g4181 757 PANTHER U BOX DOMAIN-CONTAINING 2 739 - -
Tpr4g4181 757 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 739 - -
Tpr4g4181 757 Pfam U-box domain 276 345 IPR003613 GO:0004842|GO:0016567
Tpr4g4181 757 CDD RING-Ubox_PUB 281 321 IPR045210 -
Tpr4g4181 757 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Tpr4g4181 757 MobiDBLite consensus disorder prediction 737 757 - -
Tpr4g4181 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 349 IPR013083 -
Tpr4g4181 757 Gene3D - 440 726 IPR011989 -
Tpr4g4181 757 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4181 Tpr-Chr4 48835956 48842206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4181 15 712 U-box Gene Family AT4G36550 38.614 4.35e-143 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4181 - - gmx:100798951 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4181 4 48835956 48842206 Tpr4g4181 4 48835956 48842206 ECH
Tpr2g0994 2 11903400 11908308 Tpr4g4181 4 48835956 48842206 ECH
Tpr2g0994 2 11903400 11908308 Tpr4g4181 4 48835956 48842206 PCT