Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4172 ATGATGCATCATTGTTGCAGTAGCTCTCAAACAACATGCACATGCGGCATGTTTCATCCTCAAACCATGCTTTTCTCTAACTACCAACAACAACAACAACAACAATATCATGATGATCATTACGATAATCATTATGATGCTTACTCTTACTCTACACCTTCATCTTCTGTTGATTGTACACTCTCTCTTGCTACACCTTCTACCCGTTTATCTGAAGATCAAGACAAACAAAACCGTCGTTCTTCTTCGATTACTAATTTCTTTTGGAACAAGAATCCTTCTAAATCTAAACAAAATTCTCAATCTCAAAACAAAAACCGAGGAAATAATATTGGTAATAACTCTAACAATGATTCTCTTCTTGCTCGTCGATGTGCTAGCTGTGACACCACTTCTACACCCCTTTGGAGGAACGGTCCTCGCGGCCCAAAGTCACTATGCAATGCTTGTGGGATTAGATACAAAAAAGAAGAAAGAAGAGCAAATGCTGCAAACGTTAATGCCACGTCAGCAGTAACAGCAAGTGGAGTAATCGAGTCAGGGCAAGTCTACAGCAACAATTCCTGGTACGCACATCAACAGAATCAAATGTATGGAAATGAATTACGTTTTATGGACGATTCAGATGCAGAATCAGAAAATGGAATTCCAAATTTTCTTTCTTGGAGACTTAACACAAGCCTTGTTCATGATTACACAAGATGA 705 0.3858 MMHHCCSSSQTTCTCGMFHPQTMLFSNYQQQQQQQYHDDHYDNHYDAYSYSTPSSSVDCTLSLATPSTRLSEDQDKQNRRSSSITNFFWNKNPSKSKQNSQSQNKNRGNNIGNNSNNDSLLARRCASCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAANVNATSAVTASGVIESGQVYSNNSWYAHQQNQMYGNELRFMDDSDAESENGIPNFLSWRLNTSLVHDYTR* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4172 234 MobiDBLite consensus disorder prediction 68 116 - -
Tpr4g4172 234 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 122 164 - -
Tpr4g4172 234 SMART GATA_3 119 171 IPR000679 GO:0006355|GO:0043565
Tpr4g4172 234 ProSitePatterns GATA-type zinc finger domain. 125 150 IPR000679 GO:0006355|GO:0043565
Tpr4g4172 234 Pfam GATA zinc finger 125 159 IPR000679 GO:0006355|GO:0043565
Tpr4g4172 234 PANTHER GATA TRANSCRIPTION FACTOR 18 1 231 IPR044272 GO:0003700|GO:0009908
Tpr4g4172 234 PANTHER GATA TRANSCRIPTION FACTOR 18 1 231 - -
Tpr4g4172 234 CDD ZnF_GATA 124 156 IPR000679 GO:0006355|GO:0043565
Tpr4g4172 234 MobiDBLite consensus disorder prediction 80 116 - -
Tpr4g4172 234 Gene3D - 121 175 IPR013088 GO:0006355|GO:0008270
Tpr4g4172 234 ProSiteProfiles GATA-type zinc finger domain profile. 119 155 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4172 Tpr-Chr4 48730292 48731890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4172 1 234 C2C2-Gata Transcription Factor Family AT3G50870 39.590 7.34e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr4g4172 GATA 1.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4172 - - gmx:100799154 218.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4172 4 48730292 48731890 Tpr4g4172 4 48730292 48731890 ECH
Tpr2g0984 2 11792903 11795101 Tpr4g4172 4 48730292 48731890 PCT