Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4163 ATGAGTTGTGGTGATGAGAGCAAGATTTGTTTCTGTCGCTCAAAGTCACACCTTAATTGGGACAATGTGGATGACGTCTGCCACCTTAATCCTCATCTGCGTAAAAATCGAACCTCCACCTGCACCAGAGGTATTCGACAATGGGAAACTCTACCACCTGAATTACTTTTGGACATAATTCGGCGTGTTGAAGAGAGTGAGACATTTTGGCCTGCGCGTGCTGCTGTTGTCTGTTGTGCTTCGGTATGTAAATCATGGAGGTCTGTAACGAGAGAGATTATCAAGAATCTTCAACAATGTGGAAAGATCACATTTCCAATTTCATTGAAGCAGCCCGGTCCCCGTGATCATCTGATGCAATGCTATATTATGAGGAATAGAATAACTTCTACATTCCGGTTGTACTTATGTTTGCGGCCATCGGTGAATTGTAGAAAGTTGTTATTAGCCGCCAAATGGAAGAGATGGTTCGAATTTGCCATATCCTTGGCTGCAGACGATTTTTCTCAAGCCAAATGTGTTGGTAAACTGAGGTCTAATTTTTGGGGCACCAAGTTCACTATATATGACACTCAACTTCTGCAAGACGCTGCAGTTCAACCAAATTTTCGGTCAAGCGAGAGATTTAATTCTAAGGTGTCACCAAGAAGTGTTCCATATGACAATCTTGTTAGCACCATTTCCTATGAGTGGAAGACTAAAACACCAAGACGAGTGCACTGCGTCATGAACTCTATACCTGTCTCGGCTATTCAGGAAGGGGGAAACGCTCCTACTCCAAAATCATTACCTCGAATATTTTATGAACCCTTTCCAAAGACAGATTCATACTCTACAAGTGACCTATCAGAGCAACCAGGACTGAGCCAAGGCGCGGTCGAGCCCTTGATACTAAAAAACAAGCCTGCCAGATGGGATGATTGGTGCAAGAGTTGGTGCCTAGACTACATGGGTCAGACTATAAAGTCATCTGGAAGGAACTTTCAACTTGTAGCTGATGTTGATCCGTCTCATAATGTTTCACTTGCGGAGCAAGAAAGGGTAATCTTGAATTTTGGAAAGGTTGGAAAAGATATATTCATCATGGAATACTCTTATCCACTCTCTGCCTTCCAAGCCTTTTCCATCTGCTTGACATCATTCATTTGTAACATGTACAAATCAAAATGCAAAGCTTAA 1179 0.4241 MSCGDESKICFCRSKSHLNWDNVDDVCHLNPHLRKNRTSTCTRGIRQWETLPPELLLDIIRRVEESETFWPARAAVVCCASVCKSWRSVTREIIKNLQQCGKITFPISLKQPGPRDHLMQCYIMRNRITSTFRLYLCLRPSVNCRKLLLAAKWKRWFEFAISLAADDFSQAKCVGKLRSNFWGTKFTIYDTQLLQDAAVQPNFRSSERFNSKVSPRSVPYDNLVSTISYEWKTKTPRRVHCVMNSIPVSAIQEGGNAPTPKSLPRIFYEPFPKTDSYSTSDLSEQPGLSQGAVEPLILKNKPARWDDWCKSWCLDYMGQTIKSSGRNFQLVADVDPSHNVSLAEQERVILNFGKVGKDIFIMEYSYPLSAFQAFSICLTSFICNMYKSKCKA* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4163 392 PANTHER TUBBY-RELATED 43 381 - -
Tpr4g4163 392 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 43 381 - -
Tpr4g4163 392 Pfam Tub family 109 381 IPR000007 -
Tpr4g4163 392 Gene3D Tubby Protein; Chain A 108 381 IPR025659 -
Tpr4g4163 392 Gene3D - 45 96 - -
Tpr4g4163 392 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Tpr4g4163 392 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Tpr4g4163 392 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Tpr4g4163 392 PRINTS Tubby superfamily signature 345 364 IPR000007 -
Tpr4g4163 392 PRINTS Tubby superfamily signature 366 388 IPR000007 -
Tpr4g4163 392 SUPERFAMILY Tubby C-terminal domain-like 99 381 IPR025659 -
Tpr4g4163 392 Pfam F-box domain 48 93 IPR001810 GO:0005515
Tpr4g4163 392 SUPERFAMILY F-box domain 48 92 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4163 Tpr-Chr4 48653710 48655340 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4163 32 381 TUB Transcription Factor Family AT2G18280 49.185 7.90e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tpr4g4163 Tub 7e-68 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4163 K19600 - gmx:100805380 407.527