Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4158 ATGTCATTGAAAAGCATAGTAAAAAATGGAATAGGTAGCGGATCAAGTAAGCGTTGGATCTCTCAATCAAAGTCACACGTTGCTTCGGATGTAACTTCAATTGAACCTATTCAACAAGGACAGTGGGCAAATCTACCACCCGAATTGCTTTTGGATATAATCCGGCGGGTTGAAGAGAGTGAGACATCTTGGCCTGAGCGTGCTGTTGTTGTCTATTGTGCTTCGGTATGTAAATCATGGAGGTCCGTAACGAAAGAGATTATCAAGAATCTTCAACAATGTGGAAAGATCACATTTCCTATTTCATTGAAGCAGCCCGGTCCCCGTGATCATCTGATGAAATGCTTTATTAGAAGGATTAAAGGGACTTCTACATTTCTGTTGTACTTAGGTTCGATGCTATCGAAGAATAAGAGTAGTAAGTTTTTATTAGCCGCCAAAAGGATAAAAAGGGCTGCACGCATCGACTTTGTCATATCCTTGGCTGCAGACGATTTTTCTCCCGCCAGCAACAAATATGTTGGTAAACTGAGGTCTAATTTTTGGTGCAACAAGTTCACTATATGCGACAGTCAACCTCCACATGATGCTTCCGTTCAACAAAATTGTCGAACAAGCAAGAGATTTAATTCTAAGCAGGTGTCACCGAAAAGTGCACGTTGTCATCTTGTTAGCACCATTTCCAATGTGCTGTTCTTTAGAAAGAAAAGAAATGTACACTGCATCATGAACTATATACCTATCTCAGCTATTCAGAAAGGGGGAAACGCCGGCCTGACTCCAACATCTTTACCTCAAATATTTGATGAAACTATTTGTCCTTCTTCAGCACTTAACCAAGCCTCAGCCGAGCCCTTGATACTCCAAAACAACGCTCCCATGTTGTGGGATGACCGCAGCAAGAGCTTTCAACTTGTAGCCGCTGTTGATCCATCTCATAATGTTTCTCCTGCCGAGCGAAAAAGGATAATCTTGCAGTGTGGAATGATTGAAAAAGATATATTCGTCATGGACTACTCTTTTCCAATTTCTGCCTTCGAAGCCTTTGCCATCTGCTTGACGTCAATGTAA 1071 0.4164 MSLKSIVKNGIGSGSSKRWISQSKSHVASDVTSIEPIQQGQWANLPPELLLDIIRRVEESETSWPERAVVVYCASVCKSWRSVTKEIIKNLQQCGKITFPISLKQPGPRDHLMKCFIRRIKGTSTFLLYLGSMLSKNKSSKFLLAAKRIKRAARIDFVISLAADDFSPASNKYVGKLRSNFWCNKFTICDSQPPHDASVQQNCRTSKRFNSKQVSPKSARCHLVSTISNVLFFRKKRNVHCIMNYIPISAIQKGGNAGLTPTSLPQIFDETICPSSALNQASAEPLILQNNAPMLWDDRSKSFQLVAAVDPSHNVSPAERKRIILQCGMIEKDIFVMDYSFPISAFEAFAICLTSM* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4158 356 Gene3D - 35 90 - -
Tpr4g4158 356 SUPERFAMILY Tubby C-terminal domain-like 93 356 IPR025659 -
Tpr4g4158 356 Gene3D Tubby Protein; Chain A 100 356 IPR025659 -
Tpr4g4158 356 Pfam F-box domain 42 87 IPR001810 GO:0005515
Tpr4g4158 356 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 1 356 - -
Tpr4g4158 356 PANTHER TUBBY-RELATED 1 356 - -
Tpr4g4158 356 Pfam Tub family 103 305 IPR000007 -
Tpr4g4158 356 SUPERFAMILY F-box domain 37 85 IPR036047 GO:0005515
Tpr4g4158 356 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Tpr4g4158 356 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Tpr4g4158 356 PRINTS Tubby superfamily signature 218 245 IPR000007 -
Tpr4g4158 356 PRINTS Tubby superfamily signature 320 339 IPR000007 -
Tpr4g4158 356 PRINTS Tubby superfamily signature 341 356 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4158 Tpr-Chr4 48614590 48615987 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4158 1 356 TUB Transcription Factor Family AT2G18280 45.663 1.00e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tpr4g4158 Tub 6.9e-54 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4158 K19600 - gmx:100805380 427.943