Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4146 ATGGGTTCACCCCCACACAACAATTCACCAGATGATGCTACACCTGATAATGCTACCCCTGATGATGCTGATGGATCATCATCAAGAAATCCACCTTCTTCATCTTCATCACACAAATCAAGTAAATCATCATCAAAAAATAGCAGCAACAATGATGATGATAGTAAGGCCATAATTGGAGCTGCTGTTGGAGCTGGATTTGTTATTCTTGTCTTGGTTTGTTTTTGTTTAATTTGTAAGAGGAGGAAGAAGAAGAAGGGAAACCCGCAAAATTATTATTATGGTCCTGGAGAAAATTCAAAAGGGAGCAATTATTACCACAGTGGACAACATCCTCATCCAAATTGGCAAGGAGGCCCAGGACCAGGCCCAAGTCCAAGCCCACATGGAATGGATCATGTTGTTAGAGTCCAACAAGCACCAAATGGAAGTGGTGTTTGGGGTGCACCACACCCTTTAATGAATAGTGGTGAAATGAGTGCCAATTATTCATATGGAATGGGCCCACCTATGCCTCCTCCTTCACCAGGCCTATCTCTTAGTCTCAAGGGTGGTACCTTCACTTATGAGGAATTGGCATCAGCTACTAAGGGATTTGCTAATGAGAATATTTTAGGACAAGGTGGTTTTGGTTATGTCCATAAGGGAACTTTACCTAATGGAAAAGAAGTTGCTGTTAAAAGTTTAAAATCGGGTAGTGGGCAAGGCGAGCGTGAGTTTCAAGCAGAGATTGATATCATTAGTCGTGTTCATCATCGTCATCTTGTGTCGCTTGTTGGATATTGTGTTTCCGGTGGACAAAGAATGTTGGTTTATGAATTTGTTCCAAATAAAACTTTGGAACATCACCTTCATGGAAAGGGTGTGCCTACCATGGATTGGCCTACTAGAATGAAAATTGCATTAGGATCAGCTAAAGGGCTTGCTTATCTTCATGAAGATTGTAGTCCTCGCATTATCCATCGTGATATTAAGGCTGCTAATGTTCTAATTGATGATAGCTTTGAAGCTAAGGTGGCTGATTTTGGATTGGCTAAGTTAACTACTGATACTAGCACACATGTTTCAACCCGTGTCATGGGAACATTCGGGTACATGGCCCCAGAATATGCATCAAGTGGAAAATTGACAGAGAAATCAGATGTTTTCTCCTTTGGGGTTATGCTACTAGAACTCTTAACTGGGAAACGACCTTTGGATTTGACCAATGCCATGGACGAAAGCTTAGTCGATTGGGCTCGACCACTCTTGAATAAAGCACTAGAGGGGGATGGCAACTTTAGTGAATTGGTGGATCCATTTTTGGAAGGAAAATACAATCATCAAGAAATGATAAGATTGGCAGCTTGTGCTGCTAGTAGCATTTGTCATTCTGCTAAGAAACGTATAAAAATGAGTCAGATAGTAAGAGCATTAGAAGGTGATGTTTCACTAGAAGACTTAAAGGCAGGGATGGTGAAATCTTCAGGAGGGAATGCAAGTGCTTATACCTTTACAGCTGGCTCAGAATATGATACACAGCAATACAATGCAGATATGATGAAATTTAGAATGGCAATAATGTCAAATCAAGAATTTGGTGATAGCAGTGAACTCTCTAGTAAGGAGATGGGTCGTCACTAG 1623 0.4097 MGSPPHNNSPDDATPDNATPDDADGSSSRNPPSSSSSHKSSKSSSKNSSNNDDDSKAIIGAAVGAGFVILVLVCFCLICKRRKKKKGNPQNYYYGPGENSKGSNYYHSGQHPHPNWQGGPGPGPSPSPHGMDHVVRVQQAPNGSGVWGAPHPLMNSGEMSANYSYGMGPPMPPPSPGLSLSLKGGTFTYEELASATKGFANENILGQGGFGYVHKGTLPNGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCVSGGQRMLVYEFVPNKTLEHHLHGKGVPTMDWPTRMKIALGSAKGLAYLHEDCSPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDTSTHVSTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVMLLELLTGKRPLDLTNAMDESLVDWARPLLNKALEGDGNFSELVDPFLEGKYNHQEMIRLAACAASSICHSAKKRIKMSQIVRALEGDVSLEDLKAGMVKSSGGNASAYTFTAGSEYDTQQYNADMMKFRMAIMSNQEFGDSSELSSKEMGRH* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4146 540 ProSitePatterns Protein kinases ATP-binding region signature. 205 227 IPR017441 GO:0005524
Tpr4g4146 540 PANTHER RECEPTOR-LIKE KINASE 3 539 - -
Tpr4g4146 540 MobiDBLite consensus disorder prediction 1 52 - -
Tpr4g4146 540 SUPERFAMILY Protein kinase-like (PK-like) 174 472 IPR011009 -
Tpr4g4146 540 SMART serkin_6 199 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4146 540 Gene3D Phosphorylase Kinase; domain 1 179 274 - -
Tpr4g4146 540 CDD STKc_IRAK 205 474 - -
Tpr4g4146 540 ProSiteProfiles Protein kinase domain profile. 199 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4146 540 Pfam Protein tyrosine and serine/threonine kinase 202 400 IPR001245 GO:0004672|GO:0006468
Tpr4g4146 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 319 331 IPR008271 GO:0004672|GO:0006468
Tpr4g4146 540 Gene3D Transferase(Phosphotransferase) domain 1 275 485 - -
Tpr4g4146 540 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 3 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4146 Tpr-Chr4 48465700 48469902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4146 56 531 Trihelix Transcription Factor Family AT1G70460 50.625 3.85e-149 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Tpr4g4146 PK_Tyr_Ser-Thr 3.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4146 - - gmx:100805872 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4146 4 48465700 48469902 Tpr4g4146 4 48465700 48469902 ECH
Tpr2g0966 2 11589475 11595086 Tpr4g4146 4 48465700 48469902 PCT