Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4140 ATGGTTGATTTAGACAATGTTTCAACAGCTTCAGGTGAAGCTAGTATCTCTTCATTTGGTAATAACAACAATAATCAAACCCCAAAACCCACCAAGAAAAAAAGAAATCTCCCAGGAATGCCAGATCCAGAAGCAGAAGTGATAGCTTTATCACCAACAACTTTGTTAGCAACAAACAGATTTGTATGTGAAATATGTAACAAAGGTTTTCAAAGAGATCAGAATCTTCAACTTCATAGAAGAGGACATAATTTACCATGGAAACTAAGACAAAGATCAAGTAAAGAAGTTAGGAAAAGGGTTTATGTTTGTCCTGAATCAACTTGTGTTCATCATGATCCTTCTAGAGCTTTAGGTGATTTAACTGGAATTAAAAAGCACTTTTGTAGAAAACATGGTGAGAAGAAGTGGAAATGTGATAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAAGTTTGTGGTTCTAGAGAGTATAAATGTGATTGTGGAACTGTTTTTTCCAGGAGGGATAGTTTTATCACACATAGAGCTTTTTGTGATGCTTTGGCTGAAGAGAATGCAAAATCTCAGAATCAAGCTGTTGGGAAAGCTAATTCAGAATCTGATTCAAAGGTTTTGACAGGTGATTCATTGCCGGTGGCGCCCACGCCGGCTGCTATAACAACTCCTCAGTCAAATAGTGGTGTGTCCTCTGCTTTGGAGAATCAAAAGCTAGATTTGCCGGAAAATCCACCGCAAATCGTAGAGGAGCCAGAAGCTATTGTTACTACTACTACTGCTGCTGCTGCTGCTGCTGTTTTGAATGCCAATTGTAGTAGTAGTAGCAGCACTAGCTCGACAAGTAATGGTTGTGCTGCTACTAGCAGTGGCGTGTTTGCAAGTTTGTTTGCTTCATCAACAGCTTCGGCTTCTGCAAGTATGCAATCTCATACACCAGTGTTTACTGATTTAATTAGGTCGATGGGATGTCCAGATCGCTCGACAGATTTCTCAGCTCCTCCGTCGTCCGAGGCCATATCTCTTTGTCTCTCGACCAATCCTGGATCATCAATTTTCGGAACAGGAGGGCAGGAGTGTCGTCAATATGTGCCTACACATCAGCCGCCAGCAATGTCTGCCACTGCATTACTGCAGAAAGCTGCTCAAATGGGAGCTGCCGCAACTAACGCATCTTTGCTTCGTGGGCTTGGAATTGTGTCATCTTCAGCTTCCACTTCATCAGGTCAGCACGATAGCCTGCACTGGGGTCTCGGACAAGTGGAACCGGAGGGTTCTGGTTTAGGTCCAGCAGGACTTGGACTCAGACTTCCTTGTGACGGTGATTCAGGACTAAAGGAATTAATGTTAGGGACTCCATCAATGTTTGGTCCTAAACAGACAACTCTTGATTTTCTAGGATTAGGTATGGCTGCTGGTGGAAGTGCTGGCGGAGGCTTGTCAGCACTTATTACATCAATCGGTGGCAGCGGTGGTTTGGATGTTACCGCAGCAACTGCATCCTTCGGCAACGGAGAGTTTTCCGGCAAAGATATTGGAAGGAATTCATGA 1566 0.4317 MVDLDNVSTASGEASISSFGNNNNNQTPKPTKKKRNLPGMPDPEAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPESTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGSREYKCDCGTVFSRRDSFITHRAFCDALAEENAKSQNQAVGKANSESDSKVLTGDSLPVAPTPAAITTPQSNSGVSSALENQKLDLPENPPQIVEEPEAIVTTTTAAAAAAVLNANCSSSSSTSSTSNGCAATSSGVFASLFASSTASASASMQSHTPVFTDLIRSMGCPDRSTDFSAPPSSEAISLCLSTNPGSSIFGTGGQECRQYVPTHQPPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASTSSGQHDSLHWGLGQVEPEGSGLGPAGLGLRLPCDGDSGLKELMLGTPSMFGPKQTTLDFLGLGMAAGGSAGGGLSALITSIGGSGGLDVTAATASFGNGEFSGKDIGRNS* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4140 521 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 2 520 - -
Tpr4g4140 521 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 520 - -
Tpr4g4140 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Tpr4g4140 521 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Tpr4g4140 521 SMART c2h2final6 61 83 IPR013087 -
Tpr4g4140 521 SMART c2h2final6 102 132 IPR013087 -
Tpr4g4140 521 SMART c2h2final6 137 157 IPR013087 -
Tpr4g4140 521 MobiDBLite consensus disorder prediction 1 38 - -
Tpr4g4140 521 MobiDBLite consensus disorder prediction 8 32 - -
Tpr4g4140 521 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Tpr4g4140 521 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Tpr4g4140 521 Gene3D Classic Zinc Finger 41 111 - -
Tpr4g4140 521 Gene3D Classic Zinc Finger 114 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4140 Tpr-Chr4 48397378 48400647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4140 2 521 IDZ Gene Family AT5G66730 58.152 4.37e-180 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr4g4140 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4140 K25869 - gmx:100806404 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4140 4 48397378 48400647 Tpr4g4140 4 48397378 48400647 ECH