Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4139 ATGAGAGTTCCTCCTCCTGCTGTTTCTTCATCTTCATCGACATCTTCATCACCGCAACAACCAAAAGTCACTACTCAAAACATCCTCGTTCCGGCTTCCAATAACCCGACAACAACAACAACAACCACCACCACTACTGCCACCTTGTGCTACGAACCACGGTCTGTCCTCGAACTTTGTCGTAGTCCTAGCCCTGAAAAGAAACCAACCCAACAAGAACAACATCAACATAATAATAATAATAACGAAGTGGAAGAAGAAGAAGATCATGCTTCCTTGCCTAATTTGGATTGGTGGGATTCCATCATGAAAGATTTGGGTTTACAAGACGACTCTTCAACTCCCATAATACCTCTTTTGAAAAATACCAATAATACCCCTGAAATTTACCCTAACCATTCTCAAGACCAATTTGATCAAACTCAAGATTTCACTTCTCTCTCAGATATTTACTCTAATAATCAAAACCTGGCCTATAATTACCCAAACACAAACATTAATCTGGATCATTTAGTTCATGAATTCAATCATAATAACCAACCAAACAACAACAATAACAACAGTAATTGGGATTTCATCGAAGAGCTTATTCGTGCCGCGGATTGTTTCGATAACAATAATCTTCAATTTGCTCAAGTGATACTAGAGCGGCTCAATCAACGGTTAAGATCACCTACCGGTAAGCCGCTACACCGAGCGGCTTTTCATTTCAAAGACGCTCTTCAATCTCTTCTCTCCGGTTCAAACCGGACTAATCCACCTCGTCTTTCATCCATGGTGGAGATTGTGCAAACCATAAGAACGTTCAAGGCCTTTTCTGGAATTTCACCAATTCCAATGTTTTCAATTTTCACAACTAATCAAGCTTTACTTGAAGCACTTCATGGATCGTTATTCATGCACGTTGTTGATTTTGAAATTGGACTTGGAATTCAATACGCTTCTCTTATGAAAGAGATTGCTGAAAAAGCTGTTAACGGTTCGCCGTTGCTTCGTATCACCGCCGTCGTGCCGGAGGAGTACGCCGTTGAAAGTAGGCTTATTCGTGAGAATCTGAATCAGTTTGCGCATGACCTTGGGATTCGTGTTCAGGTTGATTTTGTGCCGTTAAGGACTTTTGAAACGGTGTCGTTTAAAGCTGTGAGGTTTGTTGAAGGTGAGAAAACTGCGATTCTGTTAACACCGGCGATTTTCTGTCGCCTAGGATCCGACGGTACTGCCGCGTTTCTTTCCGATGTTCGGAGGATAACTCCTGGTGTGGTGGTTTTTGTCGACGGCGAAGGATGGACGGAGGCAGCTTCGGCAGCGTCATTTCGCCGCGGAGTTGTGAATAGCTTGGAGTTTTATTCGATGATGCTGGAGTCGTTAGATGCTTCGGTGGCGGCCGGAGGTGGAGGAGAGTGGGCGAGGAGGATCGAGATGCTTCTGCTTCGACCGAAGATTATTTCGGCGGTGGAAGCTGCTGGAAGAAGAACGACGCCGTGGAGAGAGGCGTTTTACGGCGCGGGAATGAGGCCGGTGCAGTTGAGTCAGTTTGCGGATTTTCAGGCAGAGTGTTTGTTAGCGAAGGTACAAATCAGAGGCTTCCACGTGGCGAAACGACAGGCTGAGTTGGTGCTTTTTTGGCATGAGAGGGCCATGGTTGCCACGTCAGCTTGGCGTTGTTAG 1668 0.4514 MRVPPPAVSSSSSTSSSPQQPKVTTQNILVPASNNPTTTTTTTTTTATLCYEPRSVLELCRSPSPEKKPTQQEQHQHNNNNNEVEEEEDHASLPNLDWWDSIMKDLGLQDDSSTPIIPLLKNTNNTPEIYPNHSQDQFDQTQDFTSLSDIYSNNQNLAYNYPNTNINLDHLVHEFNHNNQPNNNNNNSNWDFIEELIRAADCFDNNNLQFAQVILERLNQRLRSPTGKPLHRAAFHFKDALQSLLSGSNRTNPPRLSSMVEIVQTIRTFKAFSGISPIPMFSIFTTNQALLEALHGSLFMHVVDFEIGLGIQYASLMKEIAEKAVNGSPLLRITAVVPEEYAVESRLIRENLNQFAHDLGIRVQVDFVPLRTFETVSFKAVRFVEGEKTAILLTPAIFCRLGSDGTAAFLSDVRRITPGVVVFVDGEGWTEAASAASFRRGVVNSLEFYSMMLESLDASVAAGGGGEWARRIEMLLLRPKIISAVEAAGRRTTPWREAFYGAGMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVATSAWRC* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4139 555 PANTHER SCARECROW-LIKE PROTEIN 15 16 554 - -
Tpr4g4139 555 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 16 554 IPR005202 -
Tpr4g4139 555 Pfam GRAS domain family 193 554 IPR005202 -
Tpr4g4139 555 ProSiteProfiles GRAS family profile. 183 554 IPR005202 -
Tpr4g4139 555 MobiDBLite consensus disorder prediction 68 91 - -
Tpr4g4139 555 MobiDBLite consensus disorder prediction 1 44 - -
Tpr4g4139 555 MobiDBLite consensus disorder prediction 63 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4139 Tpr-Chr4 48365756 48368264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4139 89 554 GRAS Transcription Factor Family AT4G36710 55.123 2.34e-168 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tpr4g4139 GRAS 8.5e-86 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4139 - - cam:101510420 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4139 4 48365756 48368264 Tpr4g4139 4 48365756 48368264 ECH