Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4135 ATGGAGACTCTGAGCAAGAAAAACAAAAGAACTGAAGACAAAGAGAGCGAAACCAACGGAGGTGATTCACATATGTCTGAAAGCAATGCAGTTGATGATCTTCCTTTGGCCAAAAGTAATGATTATCAACATTTGGTCGAAAGCAATAAAAGTGAAGATGGCAAGCAGGGCAAGAAGAAAAATAAAAAGAAGAAAACGAGTGAAGAAAGCAAAGATAAGGAGTATAAGGAGTTGAAAAGCAACGAATGTGAAGATGATAACCAAGGAAAGAAGATAAAAAAGAAGCAGATGCTAATTGAAGGAAACACACCGAAGGAGTGTAATGACTTTAGGAGCAATGTAGATGAAGATGGAAAGCAAGACAAAAAGGTGAAGAAAAAGAAGAAGAAACTAAGTGAAGAATGCATACATAAGGAGTTCGAAAGCAATGAATGTGAAGATGATAACCAAGGAAAGATGAAAAAGAAGCAGAAGCTAATTGAAGGAAACACACTAAAGGAGGGTAATGACTTTAGAAGCAATGGAGATGAAGATGGCAAGCAAGACAAAAAGATGAAGAAAAAGAAGAAACTAAACGAAGAAAGCAACCATACGGAGTATAACGAGCGCAATAGCAATGAATGTGAAGATGATAACCAAGGAAAGAAGATGAAAAAAAAGCAGAAGTTAATTGAAGGAAACTTTGGAAGCAATGGAGGCGAAGATGGTGAGCAAGACAAGAAGATGAAGAAAAAGAAACTAAGTGAAGAAAGTAAACATAAGGAGCGTAATGAGTTCAAAAGCAATGGATGTGAAGATGACCAAGGCAAGAAGATGAAAAAGAAGCGGAAACTAGTGGAAGGAAACACACTTAATGAGTGTAATGACTCTAGAAGCAATGAATGTGAAGATGGTGAGCAAGACAAGATGAAGAAAAAGAAAAAGAAACTAAGTGAAGAAAGTAAACATAAGGAGCGTAATGAGTTCAAAAGCAATGAATGCGAAGATGACCAAGGGAAGAAGATGAAAAAGAAGCGGAAACTAATGGAAGGAAACACACTTAATGAGTGTAATGACTCTAGAAGCAATGAATGTGAAGATGGTGAGCAAGACAAAAAGATGAAGAAAAAGAAAAAGAAGCCAAGTGAAGAAAGTAAACATAAGGAGTCTAGCGAGTTTAAAAGCAATGAAGGGAAACACAAACGAGTAACTTTTTCTGATGAAGTAGAGACGTTTTGTTGTGATGGCTTAGTGCGTGGGAAAAGGTTTTCACCTGAAGAAGACGAGACACTCAAAGCATCTGTTTTTGCCTATATAGATTCTCATGGTCTGGGTGAAGAAGGTCTGGATAAGGTTCTCCATGCCAGGTTACACAGTGAAGTTAGAGGCTGTTGGAAAGAAATTGCACAAGCCCTACCTCATAGGCCCCTGTATAGTGTGTATCAACGTGCTCATGCTTTGTTGGAAAATGTTGGGAGATGTAAGTGGACACCTGACGAGCTTGAATTTATACGGAAGTCCTACGAGCAACATGGACCTGATTGGAGGTTAATAGCTGATGCTTTGGGTAAAAGTCGGGATCAGGTAAAAGATTTGTGGCGCAGATTAAAATATAAGAAAGCGAGACATGGACATTGGTCCCAAGAGGAGTATCAAACTTTATTTAATTTAGTAAACATGGATCTGCGCGCAAGGTCTTTAGAGCCTTTTAGAAAATCACAACATGGTATGTTGCGAGATAATATTTGTTGGGAGGCAATTGGTCACAAATTGGAAACCCGAAACAGTGCATATTGCTGCAAGAAGTGGTATGAGGAGTTAACATCAACAATGGTTGCTCGTGGTGAATGGTGTGATACTGACGACTTCCGCTTGATAGATGCTTTATATACTTTGGATGCTTGCTGCATGGAGGAGGTAGAGTGGGACGAGCTACTTGAGCATAGGTCTGGTGATGCATGCAGAAAACGATGGGAGCAAATGGTTCAACATCTTGGGGAGCATGCAAGGAAGCCATTTATGGAGCAGGTTGAAGTTCTTACAAAGAGATTCTGCCCTGACTTGTTGGAAGCAAGAGAAACCTTTGACAACAAACCTGTGACTTGTTGA 2088 0.3937 METLSKKNKRTEDKESETNGGDSHMSESNAVDDLPLAKSNDYQHLVESNKSEDGKQGKKKNKKKKTSEESKDKEYKELKSNECEDDNQGKKIKKKQMLIEGNTPKECNDFRSNVDEDGKQDKKVKKKKKKLSEECIHKEFESNECEDDNQGKMKKKQKLIEGNTLKEGNDFRSNGDEDGKQDKKMKKKKKLNEESNHTEYNERNSNECEDDNQGKKMKKKQKLIEGNFGSNGGEDGEQDKKMKKKKLSEESKHKERNEFKSNGCEDDQGKKMKKKRKLVEGNTLNECNDSRSNECEDGEQDKMKKKKKKLSEESKHKERNEFKSNECEDDQGKKMKKKRKLMEGNTLNECNDSRSNECEDGEQDKKMKKKKKKPSEESKHKESSEFKSNEGKHKRVTFSDEVETFCCDGLVRGKRFSPEEDETLKASVFAYIDSHGLGEEGLDKVLHARLHSEVRGCWKEIAQALPHRPLYSVYQRAHALLENVGRCKWTPDELEFIRKSYEQHGPDWRLIADALGKSRDQVKDLWRRLKYKKARHGHWSQEEYQTLFNLVNMDLRARSLEPFRKSQHGMLRDNICWEAIGHKLETRNSAYCCKKWYEELTSTMVARGEWCDTDDFRLIDALYTLDACCMEEVEWDELLEHRSGDACRKRWEQMVQHLGEHARKPFMEQVEVLTKRFCPDLLEARETFDNKPVTC* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4135 695 Gene3D - 530 605 - -
Tpr4g4135 695 SMART sant 606 657 IPR001005 -
Tpr4g4135 695 SMART sant 485 532 IPR001005 -
Tpr4g4135 695 SMART sant 535 602 IPR001005 -
Tpr4g4135 695 SMART sant 412 483 IPR001005 -
Tpr4g4135 695 MobiDBLite consensus disorder prediction 234 282 - -
Tpr4g4135 695 ProSiteProfiles Myb-like domain profile. 531 600 IPR001005 -
Tpr4g4135 695 ProSiteProfiles Myb-like domain profile. 602 655 IPR001005 -
Tpr4g4135 695 CDD SANT 488 530 IPR001005 -
Tpr4g4135 695 MobiDBLite consensus disorder prediction 353 393 - -
Tpr4g4135 695 ProSiteProfiles Myb-like domain profile. 481 530 IPR001005 -
Tpr4g4135 695 Pfam Myb-like DNA-binding domain 489 547 - -
Tpr4g4135 695 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 481 534 IPR017930 -
Tpr4g4135 695 SUPERFAMILY Homeodomain-like 580 658 IPR009057 -
Tpr4g4135 695 MobiDBLite consensus disorder prediction 132 223 - -
Tpr4g4135 695 PANTHER GB|AAC33480.1 3 694 - -
Tpr4g4135 695 SUPERFAMILY Homeodomain-like 460 543 IPR009057 -
Tpr4g4135 695 MobiDBLite consensus disorder prediction 1 393 - -
Tpr4g4135 695 Gene3D - 490 529 - -
Tpr4g4135 695 MobiDBLite consensus disorder prediction 290 345 - -
Tpr4g4135 695 MobiDBLite consensus disorder prediction 1 21 - -
Tpr4g4135 695 MobiDBLite consensus disorder prediction 63 100 - -
Tpr4g4135 695 Coils Coil 300 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4135 Tpr-Chr4 48335218 48339654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4135 432 664 MYB-Related Transcription Factor Family AT3G18100 23.457 1.00e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr4g4135 Myb_DNA-bind_6 3.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4135 - - mtr:MTR_8g077990 735.717