Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4124 ATGACTTTTAATAAATTAATCAACTCCATCTTTTGGTGCTTTATTTTACTTGTTGTTATGGTGACATTTTTCACTACACATGTTAGTTCTACCAAGCACTCTAAGATAGAAGGCATGCAAATGAATGTGATTGATCAATGTTGGAGACTCAATCCTGAATGGAGGAAACATCGACAACAACTTGCCATTTGCTCGGTAGGCTTTGTAGGAAAAATGACAAATAACATAGGCAATGACCTAATCCATTATAAAGTTACTGATCCTAGTGACCACCCTTTAAACCCAAGACCTGGAACTTTGAGATATGGAGCTTCTAGAATTCAAGGTAAAATTTGGATCACATTTCAAAAGGATATGAACATTAAGCTTGAGAAACCCCTTCTCATTAGTAGTTTCACCACCATTGACGGTCGGGGTGTCAATGTTCACATTGCTGATAATGCGTGCTTGATGATATATAAGGCAACAAACATAATCATCCATGGGATTAGGGTTCATCATTGTCGACCTCAAGCTGCTGGAATGGTGATGGGTCCCAATGGAAATATAATTTCATTGGGTCAAGTGGATGGAGATGCAATTAGATTGGTTTCAGCTTCAAAGATTTGGATTGATCATAACACACTTTTTGATTGCCAAGATGGTCTTCTAGACGTTACACGAGGTTCCACCGATATTACAATCTCCAACAATTGGTTTAGAGAGCAAAATAAGGTTATGCTTCTTGGACATGATGATGGATTTGTGAGAGACAAAAACATGAAAGTCACTGTTGTATACAATTATTTTGGACCTAATTGCCAACAACGCATGCCTAGAATTCGTTATGGATATGCACATGTTGCGAATAATTTGTACATGGGATGGGTCCAATATGCAATAGGAGGAAATATGCAACCAAGCCTCAAAAGCCAAGCAAACCTCTTTATAGCGCCAACCACAGGGAATAAGGAGGTGACATGGAGAAAAAGTAGTAACGGAATTGGAGACATGTGGGAATTTTATTCAGTTGGGGATGCTTTTGAAAATGGAGCATCTTTCATGGAAACAAAAGGTGGACAAGTGAAAAAACTGAATTATAGCCCTGTACAAAATTTTAAAGTTGTTGATGCCAAATTTGTGAGATCATTGACAAGATCATCTGGTGTATTACAATGCAGTAAAACCTCAATATGTTGA 1179 0.3774 MTFNKLINSIFWCFILLVVMVTFFTTHVSSTKHSKIEGMQMNVIDQCWRLNPEWRKHRQQLAICSVGFVGKMTNNIGNDLIHYKVTDPSDHPLNPRPGTLRYGASRIQGKIWITFQKDMNIKLEKPLLISSFTTIDGRGVNVHIADNACLMIYKATNIIIHGIRVHHCRPQAAGMVMGPNGNIISLGQVDGDAIRLVSASKIWIDHNTLFDCQDGLLDVTRGSTDITISNNWFREQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCQQRMPRIRYGYAHVANNLYMGWVQYAIGGNMQPSLKSQANLFIAPTTGNKEVTWRKSSNGIGDMWEFYSVGDAFENGASFMETKGGQVKKLNYSPVQNFKVVDAKFVRSLTRSSGVLQCSKTSIC* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4124 392 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Tpr4g4124 392 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Tpr4g4124 392 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Tpr4g4124 392 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Tpr4g4124 392 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Tpr4g4124 392 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Tpr4g4124 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Tpr4g4124 392 PANTHER PECTATE LYASE 5 389 - -
Tpr4g4124 392 Pfam Pectate lyase 128 309 IPR002022 -
Tpr4g4124 392 Gene3D - 41 385 IPR012334 -
Tpr4g4124 392 PANTHER PECTATE LYASE 18-RELATED 5 389 IPR045032 GO:0030570
Tpr4g4124 392 SMART amb_all 118 315 IPR002022 -
Tpr4g4124 392 SUPERFAMILY Pectin lyase-like 35 386 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4124 Tpr-Chr4 48187461 48189279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4124 72 319 Polysaccharide Lyase AT5G09280 67.742 2.95e-136 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4124 K01728 - gmx:100811216 682.174