Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4119 ATGGGAATAGCAACAACACAATCATCAATTCCTTCAACTTTCTCAAATTCATCAAACACTTACCAATATCATAATTCTTCCTTTAATTCAATCTTACAAAAGTCTCAAAATTCAACCAATTCTATGTCACAAGATTATCACCACCACCACCAGCAAGGAATTTTCAACTTCTCGAACGGATTCGAGAGGTCGAACACTCCATTAGAAACCAACAATTCACCAAACCACCAACAACAACAAATTCAAAGAGACAAAGTCAGACTACATGGCTTCGACTCACAACAACAACAACAACCACCACCACAACCGTCTTTAATCGGCGGTATAGAAGAAGAACAAGAAGCTCTCCCGGTTTATGAAACAACCGGAATGTTGTCTGAGATGTTCAATTTCCCTCACGGCGCCTCTTCTGCAGCTGAATTATTAGAGCAACAACAACAGCAGCAACAACAACTGGCATCCACACGAACACCACCACCGCCACATGGAATAACCAATTCCAATGACTGGTACGGTAACAGACAATCAATTTTAACAGATTCAAAAAATCATAATAATAACCGTGACAGTAGCAGCAGCAACAGCAGCATATTTCATCATCATCAGATGTCAAACATAAATGCTGAGTCAGCAGCTGCCATGCAGCTTTTTCTCATGAATCCACAAACCACCAGATCCCCTTCTCCTCCACCATCTACTAATTCTTCAACTCTTCACATGTTACTTCCAAATCCTTCAACAACAAATCTTCAAGGTTTTAACTCCGGAACCACCGGAGGGTCATTTGGTCAATTCACATGGGGACAAGAAGGAGCAGGAGGAGGAGCAACAACAAGTCATCATCATCATCATCATCATCAACTCAACAATAACCAACCTGAGATTGCAAGTGTTGTTGAAGGACAAGGTCTTTCATTATCTTTATCTTCTTCCTTACAACAACAACAACATCATTCAGATGAATTAAGAATGGGTGACCCTGCTGGTTTTTTATATTACAATCAAGGTGGAGCCGGAGGAGTAGGAACTTCTTACAAGAACATTGGTGGTGTTCATCATCATTTACAAGGAACTGGATTAGGACAAATTAATCATATTCATCATGGACATGTTGGATTTGGTTCATCATCTTCTCCTTCTTCATTAGGTGTTGTTAATGTGTTGAGAAATTCAAAGTATGTTAAAGCTGCTCAAGAATTGCTTGAAGAGTTTTGTAGTGTTGGAAGGGGTCAATTCAAGAAGAATAAATTTAGTAGACAATTATCAAACCCTAATTCAAATCAAGGCGGCGGCGGTGGCGGTGGTGGTGGTAGTGTTGGTGGTGCTTCTTCATCTTCTTCAAAAGATGTTTCACCTTTGTCACCAGCTGATAGGATTGAGCATCAAAGAAGGAAGGTCAAACTTCTAACAATGCTTGACGAGGTGGACAGAAGATACAGTCATTACTGTGAACAAATGCAAATGGTAGTGAACTCATTTGACTTAGTAATGGGATATGGTGCTGCAGTTCCATACACAGCATTAGCACAAAAAGCAATGTCACGCCATTTTCGTTGTTTAAAGGATGCAATAACAGCACAGTTGAAACACAGTTGTGAGTTATTAGGAGAGAAAGATGGTGTGGGGACCTCAGGTTTGACTAAAGGAGAAACACCAAGACTTAAATTGCTTGAACAAAGTTTAAGACAACAAAGAGCGTTTCATCAAATGGGGATGATGGAACAAGAAGCTTGGAGACCACAAAGAGGTTTGCCTGAACGTTCTGTCAATATTTTGAGAGCTTGGCTTTTTGAGCATTTTCTTCACCCGTACCCTAGCGATGCAGATAAGCATCTCTTAGCAAGACAGACTGGCCTTTCCAGAAATCAGGTATCAAACTGGTTCATTAATGCTAGAGTTCGTTTGTGGAAACCCATGGTAGAAGATATGTACCAACAAGAACTTAAAGAAGCTGAAGCATCATCAGAAAGAGATGAAGAAGATCATCAAGAAAATAATAACAAGAATCATCAAACCAGTACAAGCAACAACAACATCACTAGTGGTCACATATCTACAACTACAAATATTGCACAAACTCCAACACCACCTTCAACAACAACAACAACACAACCTACTAGTAACAACAAGAGATCCAACAACAATATTATTACTATCAATGCCAATGAAAATGACCCATCACTTACACCAATAATAAATAGTAATAGACAATTACCCTTCTCGGAAAACCAATCTGCCACCCAAAAAACCACCGTATCTGAGGTGGCGCCACCTATCTCCGATTCAATGAATATTGATGACACGTGTCGACATGGAAGCTTTGTTACAGGTGAATATGGGTCCACTTCAGCTGACACACTCATTAGATTTGGGACCACTACTTCTGGTGACGTGTCACTCACTTTAGGGCTACGTCATGCAGGAAATTTGCCAGACAAAACATCACCACCTTTCTCTCTTACAGACTTTGGAGGCATTTAA 2481 0.401 MGIATTQSSIPSTFSNSSNTYQYHNSSFNSILQKSQNSTNSMSQDYHHHHQQGIFNFSNGFERSNTPLETNNSPNHQQQQIQRDKVRLHGFDSQQQQQPPPQPSLIGGIEEEQEALPVYETTGMLSEMFNFPHGASSAAELLEQQQQQQQQLASTRTPPPPHGITNSNDWYGNRQSILTDSKNHNNNRDSSSSNSSIFHHHQMSNINAESAAAMQLFLMNPQTTRSPSPPPSTNSSTLHMLLPNPSTTNLQGFNSGTTGGSFGQFTWGQEGAGGGATTSHHHHHHHQLNNNQPEIASVVEGQGLSLSLSSSLQQQQHHSDELRMGDPAGFLYYNQGGAGGVGTSYKNIGGVHHHLQGTGLGQINHIHHGHVGFGSSSSPSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNKFSRQLSNPNSNQGGGGGGGGGSVGGASSSSSKDVSPLSPADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMQMVVNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGVGTSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEASSERDEEDHQENNNKNHQTSTSNNNITSGHISTTTNIAQTPTPPSTTTTTQPTSNNKRSNNNIITINANENDPSLTPIINSNRQLPFSENQSATQKTTVSEVAPPISDSMNIDDTCRHGSFVTGEYGSTSADTLIRFGTTTSGDVSLTLGLRHAGNLPDKTSPPFSLTDFGGI* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4119 826 MobiDBLite consensus disorder prediction 668 714 - -
Tpr4g4119 826 Pfam Associated with HOX 387 525 IPR006563 -
Tpr4g4119 826 CDD homeodomain 578 639 IPR001356 GO:0003677
Tpr4g4119 826 MobiDBLite consensus disorder prediction 647 714 - -
Tpr4g4119 826 MobiDBLite consensus disorder prediction 647 667 - -
Tpr4g4119 826 SUPERFAMILY Homeodomain-like 580 645 IPR009057 -
Tpr4g4119 826 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 109 812 - -
Tpr4g4119 826 MobiDBLite consensus disorder prediction 425 459 - -
Tpr4g4119 826 SMART HOX_1 578 642 IPR001356 GO:0003677
Tpr4g4119 826 Coils Coil 641 668 - -
Tpr4g4119 826 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 109 812 - -
Tpr4g4119 826 MobiDBLite consensus disorder prediction 140 172 - -
Tpr4g4119 826 Gene3D - 581 643 - -
Tpr4g4119 826 Pfam Homeobox KN domain 595 634 IPR008422 GO:0003677|GO:0006355
Tpr4g4119 826 SMART prehox3 382 526 IPR006563 -
Tpr4g4119 826 ProSiteProfiles 'Homeobox' domain profile. 575 638 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4119 Tpr-Chr4 48106989 48117366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4119 382 826 Homeobox Transcription Factor Family AT2G23760 53.908 7.07e-149 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tpr4g4119 POX 5e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4119 - - mtr:MTR_8g078480 1168.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4119 4 48106989 48117366 Tpr4g4119 4 48106989 48117366 ECH
Tpr2g0918 2 11142968 11152742 Tpr4g4119 4 48106989 48117366 ECH
Tpr2g0918 2 11142968 11152742 Tpr4g4119 4 48106989 48117366 PCT