Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4115 ATGGCAAAATTGTCTTCGAATCGAATGGGGTTTCGAGTCTTGGTATTCGAAGATGTTCTGGACTTAGAATTATTTTCATTATTTTCAGTAGGAAATGACATGAGTTTTGAAGACAGGGTTCGAGCGACAGTTAAAGCTAAAGAAGCGGTTATTTTCTTCAAACTTGACCAAGAGATCGTGGGTTCATGGGTTTGGAAAGCTGGCGAAGCACGTTTAACAGACATGGTTAAAAGAGTGGTAGAAATTGGTAAATTTCAAGGTTACAAAGTAAGTGATTCGATTCAATTCCAGATACTTCAATTCGCGGATAATACGATCTTGGTGGGGGAAGGCTCTTGGAACAATTTATGGACTATTAAATATGTTTTGAGAGGTTTGGAAATGGTGTCAGGTTTGAAGATCAATTTTGTTAAGAGTAAGTTATACGGTATAAACGTCGATGAACGGTTTCTATTGGCTGGTGCCTCTTTCTTAACTTGCAGCTCAGAAAGTATCCCTTTCAAATTCATGGGCATTCCAGTGGGCGCTAATCCTCGGCGTAGAGAGACTTGGAGACCGGTGGTGGATGCTATGTCGAAGAGATTAAGTAGTTGGAGCGGTCGACAATTGTCATATGGTGGTAGAATTACGTTAATTAATTCGGTGTTGGCAAATGGCGGTGGATTTTTGGACCTTAAGAAACTTGTTCTCATCTTTTCTATAGATGTAAATTCACTCAAATGGTGTGGAATGCAATTTTCAAATGGATGGGTTGTGGTTTTCCTATTGGTTGAGCATGACCTGGTTGAATTTTGTGCTGTTTTGAATGTGCAAAAGATTAAGAGGGCGTTTATTTCAAGTGAAGACATGGAAAAACGGATTTGCTTTGAAAATTCTCAAGATGATATAGTGAAACTTGATGGTGAATCAAGTGACAATTCATTACTTGTAATGCAAGTTCCAGCTCATGTGACTACAGATCGACGATGCAAAGCGTATATTGTAGCCAAGGGAAGGCAATGCGCGGGAACGGCAATTAGTAATGATATATACTGTTGTGCACATTTCTCAAGTAAAAAGCGCAAATGTGTTGACGTTCGTACTCCAATTTCTCAAGTACCATCTCAAGTAGAAAATCACGTTCAAGTGCAAGAGAATGTTAACGTTCTTACTAACCAATATTTTCATGGTGAAGCATCAAGAAACAACAACAAAGAAGAATTAGCATTGTCATTTTATGAATGGTTGGAGGTGGATGAGCCTATGGCTGTGTGGTTCAAGCTTGAGTGTGAAGAGAAGTGGCATGCAGGCATCAAATGTGCAAGGGCTGATTGTCCACTAACAATTATAAGAGACAAACCAACTAATAATAATCAGAACAAAAAATTTGTCATTTTTTCTCCAAAAACAAAGAATTATTTCTGGGTTGATATGCTTCTTGTTCAATCAATTCATGAGTTTCCTCAACCTATAGCATATGAAACTCATCAAGATGGATTGAAATTTGTACAAGACTTCACTATTGCGCGACAATTTATAATGCAAAAGCTTGCCGGCGACATGCTTCATCTTGTGCATTTAATTCATTATAATGCTTTGATAGAATCTGCTCGAAATGTGATTGTTTGGAAGCAATTTGGTATGGAAGCATATAAGTGTCACACATATTCAGAACTTGGAAAAATGGTTAAGAAGCTACAAAATAACATAATGCAGCAATATATAAAGGCTAATTGGAAACTACATTCTTATGAGTCTTGGGCTGAAAGATGCAAGAATGCAAATAGTGCAGAGACAATAGAATTGCTTGAGGAGGAATTGAATGGTTCAATTTTATGGAAAGATGTCAGAGCTCTCTGGAATGCACCTGTGCAACTAAAATTGAGTTCTGAATGGGAAACATGGAAGCATGATGTGATGAAAAGTTTTGCTACATTTCATTCATTTTCTAGCAACAATGGCACACAGCCGGAGCATGCTTCGAGTTCTAATAGTTTGCGACAAGCAAGCCTTCAGTTTGGCACACAAAGGCCTAAACTTAAGGTTCGTCATGCAAATACGCATTCTATTAAGTTTGGCACTGACGATTCATTACTTGTAATGCAAGTACCAGCTCAGGTAGAAAATCAAGTTCAACTGCAAGAGAATGAGAATGACAATGATAATGATAATGTTAATGGATTGGCTATTCAAATATTTGAAGAGCCTGATACTACAGATCGACAATGCAGAGCCTACATCGAAGCCAAGGGAAGGCAGTGTGCGAGAAAGGCAATTAGGAATAATATATACTGTTGTTCGCATTTCTCAAGTAAAAAAGGGAAATCTGTTCACGTTCGTACCCCAATTTGTGGAGGTATAACTATTGCCGGTGCTAGATGTAAGCACCGTTCCCTTTATGGACGTGCATTCTGCAAGAAACATCTCCACAATGTAGAGAAGGGCCAAACATCAAATTCAAAGTGTCGCATTCGCACTCGCACTCGCACTCTTAAAAGGAAATTTGAAGAAAACTGCACTGACATGGTCTTAGTACATCCGGAAATTCCATTGGAAATCAACCCGGTGTCTGTCATCAACAGGGATGATTCTTTCTCCGCAAGGAACATCATAGGTGAAACTCTTATGCTTTCTGGTACTGATCGGAATGAAATTAAGGCTCTTCAGTGGATAGGCTCTCCTAGCCACGGTAATGATCACACCGAAGACTCTTGTTTCGATAATGAGAATGGTATTCAGTGTAAGATTTGCTTTGAAGAATTTTCTAATGATAAAACACTTGGCAACCATTGGATGGAAAATCATGAAAAAGAAGCACAATGGTTATTCAGAAGCTATGCTTGTGCAATTTGCCTTGACACCTTCACCAACAAGCAGATATTAGAATCACATGTTCGGGAGAGGCACCGTGTGCAGTTTTTCGACCATTACATACTTTTAATATGTATCCCTTGTGGTAGAGATTTTGAAAATATGGACGAATTGTGGCTACATGTTATGTCGGCTCACCCTGCTGAACTGAAACTGCCGAAAGCTCCTGCTCAACTTACTTTCTCTACCGGCGAGGATTCTCTTAAAATGATTGAGCAGGGAAATGAAGCTTCTTTAAACAATAATTCCATTATTCCAAGTGGTTCACAGAAGCTAGTCTGTAGGTTTTGTGGTTTGAAATTTGATTTAATTTCTGATCTCAATCGCCATCGTGAAGCTGTTCATATGGAGCACAATCTACCTAGTTGGGTCGAAGCATCAAATAGGTTCGGAAGAAGGGCTAGATCTAATTCAAATAGAAGAAGTCATGCAAAGAAGACTGAACCTCAGCCTAATAATAGTCTTGATATTTTATCATCGACTGCTTGCGCTGAATGCTGCCAAGACAATCTGGAGGCTTCCCTGAAAGAAAAATATGGATATTTGCCAGCAAGGCTCAATTTGAAAGCTACAAAACTTTGCATTGAATTAGCATCAGGATGA 3453 0.3889 MAKLSSNRMGFRVLVFEDVLDLELFSLFSVGNDMSFEDRVRATVKAKEAVIFFKLDQEIVGSWVWKAGEARLTDMVKRVVEIGKFQGYKVSDSIQFQILQFADNTILVGEGSWNNLWTIKYVLRGLEMVSGLKINFVKSKLYGINVDERFLLAGASFLTCSSESIPFKFMGIPVGANPRRRETWRPVVDAMSKRLSSWSGRQLSYGGRITLINSVLANGGGFLDLKKLVLIFSIDVNSLKWCGMQFSNGWVVVFLLVEHDLVEFCAVLNVQKIKRAFISSEDMEKRICFENSQDDIVKLDGESSDNSLLVMQVPAHVTTDRRCKAYIVAKGRQCAGTAISNDIYCCAHFSSKKRKCVDVRTPISQVPSQVENHVQVQENVNVLTNQYFHGEASRNNNKEELALSFYEWLEVDEPMAVWFKLECEEKWHAGIKCARADCPLTIIRDKPTNNNQNKKFVIFSPKTKNYFWVDMLLVQSIHEFPQPIAYETHQDGLKFVQDFTIARQFIMQKLAGDMLHLVHLIHYNALIESARNVIVWKQFGMEAYKCHTYSELGKMVKKLQNNIMQQYIKANWKLHSYESWAERCKNANSAETIELLEEELNGSILWKDVRALWNAPVQLKLSSEWETWKHDVMKSFATFHSFSSNNGTQPEHASSSNSLRQASLQFGTQRPKLKVRHANTHSIKFGTDDSLLVMQVPAQVENQVQLQENENDNDNDNVNGLAIQIFEEPDTTDRQCRAYIEAKGRQCARKAIRNNIYCCSHFSSKKGKSVHVRTPICGGITIAGARCKHRSLYGRAFCKKHLHNVEKGQTSNSKCRIRTRTRTLKRKFEENCTDMVLVHPEIPLEINPVSVINRDDSFSARNIIGETLMLSGTDRNEIKALQWIGSPSHGNDHTEDSCFDNENGIQCKICFEEFSNDKTLGNHWMENHEKEAQWLFRSYACAICLDTFTNKQILESHVRERHRVQFFDHYILLICIPCGRDFENMDELWLHVMSAHPAELKLPKAPAQLTFSTGEDSLKMIEQGNEASLNNNSIIPSGSQKLVCRFCGLKFDLISDLNRHREAVHMEHNLPSWVEASNRFGRRARSNSNRRSHAKKTEPQPNNSLDILSSTACAECCQDNLEASLKEKYGYLPARLNLKATKLCIELASG* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4115 1150 Pfam Zinc finger C2H2-type, 3 repeats 941 1066 IPR040689 -
Tpr4g4115 1150 ProSiteProfiles Zinc finger C2H2 type domain profile. 973 1001 IPR013087 -
Tpr4g4115 1150 ProSitePatterns Zinc finger C2H2 type domain signature. 975 996 IPR013087 -
Tpr4g4115 1150 PANTHER SET DOMAIN PROTEIN 386 1129 - -
Tpr4g4115 1150 PANTHER SET DOMAIN PROTEIN 290 364 - -
Tpr4g4115 1150 MobiDBLite consensus disorder prediction 1082 1103 - -
Tpr4g4115 1150 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 386 1129 - -
Tpr4g4115 1150 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 290 364 - -
Tpr4g4115 1150 ProSitePatterns Zinc finger C2H2 type domain signature. 1044 1065 IPR013087 -
Tpr4g4115 1150 ProSiteProfiles Zinc finger C2H2 type domain profile. 1042 1070 IPR013087 -
Tpr4g4115 1150 SMART c2h2final6 905 928 IPR013087 -
Tpr4g4115 1150 SMART c2h2final6 939 962 IPR013087 -
Tpr4g4115 1150 SMART c2h2final6 973 996 IPR013087 -
Tpr4g4115 1150 SMART c2h2final6 1042 1065 IPR013087 -
Tpr4g4115 1150 Gene3D Classic Zinc Finger 905 963 - -
Tpr4g4115 1150 ProSiteProfiles Zinc finger C2H2 type domain profile. 939 962 IPR013087 -
Tpr4g4115 1150 Pfam CCCH zinc finger in TRM13 protein 321 348 IPR021721 GO:0008168
Tpr4g4115 1150 ProSitePatterns Zinc finger C2H2 type domain signature. 907 928 IPR013087 -
Tpr4g4115 1150 ProSitePatterns Zinc finger C2H2 type domain signature. 941 962 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4115 Tpr-Chr4 48043317 48064399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4115 396 843 C2H2 Transcription Factor Family AT2G23740 36.727 1.56e-87 308
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4115 4 48043317 48064399 Tpr4g4115 4 48043317 48064399 ECH