Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4096 ATGAAAAGACAGAGAGATGAAAGAGTAGGGAACATAGATTTGGCAAATTGTGTAATTCTACTCTCTCATCCCAAAGAAGCCAAACATAAGAAACATTTTGGTCCTGTTGATTTTGAGTGCACCACATGCAACCGCAAGTTCTCTTCGTTTCAAGCACTTGGTGGTCATAGGGCTAGTCACAAGAAACCCAAACTAGAAAGCACAAAACTCAAATTACAGTCCCAAACTTTGGGTTTGATGAATAAGCCTAAAATTCATGGGTGCTACATTTGTGGTAAACAATTTTCAATTGGTCAAGCTTTGGGAGGACATATGAGAAGGCATAGAATTGCCATCAATAAAGGGTATTGTTTGGTGAAGAAAAATAAGGTTGTTGGAAAAGTCCCAATATTAAAAAGATCGAATAGTAAGAGGATTATGTGTTTGGACTTGAACTTAACACCTTTGCAAAATGACTTGAAGTTATTGTTTGGAAATATGGCACCTAAAGTTGATTCGTTTGTCTGA 507 0.3688 MKRQRDERVGNIDLANCVILLSHPKEAKHKKHFGPVDFECTTCNRKFSSFQALGGHRASHKKPKLESTKLKLQSQTLGLMNKPKIHGCYICGKQFSIGQALGGHMRRHRIAINKGYCLVKKNKVVGKVPILKRSNSKRIMCLDLNLTPLQNDLKLLFGNMAPKVDSFV* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4096 168 Pfam C2H2-type zinc finger 38 63 - -
Tpr4g4096 168 Pfam C2H2-type zinc finger 86 110 - -
Tpr4g4096 168 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Tpr4g4096 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Tpr4g4096 168 SUPERFAMILY beta-beta-alpha zinc fingers 38 108 IPR036236 -
Tpr4g4096 168 SMART c2h2final6 86 108 IPR013087 -
Tpr4g4096 168 SMART c2h2final6 38 60 IPR013087 -
Tpr4g4096 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Tpr4g4096 168 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 163 - -
Tpr4g4096 168 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Tpr4g4096 168 Gene3D Classic Zinc Finger 36 108 - -
Tpr4g4096 168 PANTHER ZINC FINGER PROTEIN ZAT5 1 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4096 Tpr-Chr4 47779962 47780468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4096 1 165 C2H2 Transcription Factor Family AT2G37430 46.369 2.59e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr4g4096 zf-C2H2_6 8.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4096 - - aprc:113870747 241.891