Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4073 ATGGATCGGGCTGCGATGACTGTTGGACCGGGTATGGATATGCCGATCATGCATGATAGTGACCGTTACGATCTTGTTCGTGATATCGGCTCCGGAAATTTCGGTATTGCTAGATTGATGCAAGATAAACAGACTAAGGAACTTGTTGCTGTTAAATATATCGAACGTGGTGATAAGATTGATGAAAATGTCAAAAGAGAAATCATTAATCACAGGTCTTTGAGACACCCCAACATTGTTAGGTTTAAGGAGGTCATTTTAACACCTACTCATCTTGCTATTGTAATGGAGTATGCATCTGGAGGGGAACTTTTCGAGCGAATCAGTAATGCTGGGCATTTTTCTGAGGACGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTACTGCCATGCAATGCAAGTATGTCACCGGGACCTGAAGTTGGAAAATACTTTGTTGGATGGAAGCCCAACTCCTCGTCTGAAGATATGTGATTTTGGTTACTCCAAGTCTTCAGTGCTTCATTCACAACCAAAGTCAACTGTGGGAACTCCGGCATATATTGCTCCAGAAGTATTACTCAGACAAGAGTATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGAGTAACCTTATACGTGATGCTAGTGGGATCCTATCCCTTTGAAGATCCTAATGAGCCAAAGGATTTCCGGAAGACAATACAGAGAGTACTCAGCGTCCAGTATTCCATTCCAGATAATGTTCAAATATCTCCAGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGAGAATTACCATGCCTGAAATCTGGAAACATAAATGGTTTCTGAAGAATCTTCCCATGGACCTGATGGACGAGAAGATAATGGGCAACCAATTTGAAGAGCCTGAACAACCAATGCAGAGCATTGATACAATCATGCAGATAATTTCAGAAGCTACTATACCACCAGCTGGAACCTGTTCTTTAGACCAGTTTATGGCAGATAACATTGATATGGATGATGACTTTGATGATTTGGAATATGAATCCGAGCTTGATATAGATAGCAGTGGGGAGATAGTGTATGCTATGTACTAA 1092 0.4176 MDRAAMTVGPGMDMPIMHDSDRYDLVRDIGSGNFGIARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERISNAGHFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPTPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGSYPFEDPNEPKDFRKTIQRVLSVQYSIPDNVQISPECRHLISRIFVFDPAERITMPEIWKHKWFLKNLPMDLMDEKIMGNQFEEPEQPMQSIDTIMQIISEATIPPAGTCSLDQFMADNIDMDDDFDDLEYESELDIDSSGEIVYAMY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4073 363 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4073 363 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4073 363 Gene3D Transferase(Phosphotransferase) domain 1 99 286 - -
Tpr4g4073 363 SUPERFAMILY Protein kinase-like (PK-like) 15 318 IPR011009 -
Tpr4g4073 363 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Tpr4g4073 363 PANTHER SERINE/THREONINE KINASE 14 357 - -
Tpr4g4073 363 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4073 363 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 14 357 - -
Tpr4g4073 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Tpr4g4073 363 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4073 Tpr-Chr4 47520796 47525364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4073 22 283 CBL-interacting serine-threonine protein kinases AT5G25110 43.796 2.99e-66 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Tpr4g4073 Pkinase 3.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4073 K14498 - gmx:100806949 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4073 4 47520796 47525364 Tpr2g0879 2 10783308 10787920 PCT