Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4063 ATGGAAACCTATGATGAGTCTGTTGATGCTGATTCCATTCATTCATCTGAACGTGATTCATGGGACGATGAGTTGGACGATGATGGTAGTTATTCGGTATCTAGTGCGGATAAAAGTTCAACGGATGGCAACAATGATGCAGATGAAGTTGGAGGTGATATTAAGGTAAGGTTTGATACCGTAACTGCTGAAGAAATTCGTTGTATGGAATTTGCTACTGTGAGTGAAGCTTATGACTTTTATTACCGTTATGGTAAATATAATGGTTTTGCTGTTAGGAAAAGTGATAGTAGGGTAACAGGGAGTGGAGATAATAAAGTAATAAAAATGAAGCAGTTTGTATGCAACAAACACGGTGTAAGAGAGAAGAGACACTTAGTTAGGACAGATAGGAAATTAGAACATAGACGTTTGACTCGTACTCAGTGTGGAGCTAGGCTTCGTGTGAATTACAAAGCTGAAAAGGATAGATATGTTGTTACAGCTTTTGAAGAGACTCATAACCATGAATTAACCCCAGCTAGGTTTGTGCACTTACACCCCGTATATCGTAAAATTTCTGAGACAGATAAGGCTCAGGTGGATGGTCTTCAGAAACGTGGTATTAGAACATGCCATATAATGGGGTACATGGTTGCACAAAAGGGTGGATATGCAGGTGTTGGTTTTACAAAGAAAGATTTGTACAACTATTTTGATAAAAAAATGCGTGCTGTTATTAAAGATGGTGATGTTGCCGCATCTTTAAACTATCTAAATATGAAGTCGTCTACTGATCCCATGCTTTATGCTGAGTATGCAATAGACAATATTAATGGAAGAATGAATACTCTTTTTTGGGCTGATGGGATTAGTAGGACCGACTATTTTTGTTTTGGTGATGTGCTTGCATTTGACACGACTTACAGCAAGAACAAATACAACTATCCGTTGGTTATATTTTCAGGGTGTAACCATCACTCTCAAACAGTAATTTTTGGTGCTGCATTGGTGTCAAATGAAACGACAGAGACGTATAAGTGGGTGTTGAGGTGTTTCCTAGAATGCATGGAAGGTAAACAACCAAAAGCGGTGGTAACAGATGGAGATGGGGCAATGAGGGAGGCCATAAAACAGATATTTCCCGATGCTAACCATAGGTTATGCGCTTGGCATTTGAATAAGAATGCAGGTGAGAATGTGAAGAACGGGAATAATTTTTTGGACGGTTTTTCAAAGGCCATGTACTCAAATTTTACTATAGATGAATTTGAAGAGTATTGGTCACATATGATTAAAGAAAATGGAGTGCAAGGACATCCATGGGTAGTCAAAACGTACGAGAATAGGTCATTGTGGGCAACTGCATATCTACGTGATAACTTTTTCGGACGGATAAGAACTACGTCGCAATGTGAAGCTGTTAATGCAATTATTAAGAGTTATGTAAGGAAGAAAGGATGCATTTTTGAATTTATGAATAACTTTGATCAGGCTCTGAGAGATTACAGAAATAACGAATTGGTTGCTGATTTTAAATCATCGTCTACAGATCCTGTATTGTCGACGCAGCTGCCTGTGATTGAGAGTCATGCCGGTAAAATATATACAGCGGCGGTTTTCAAAGAAGTTAGACATGAAATTTTGAAGGCCGGTGAATTGATAGTTAGGGATAAAAGTGAAGTGGGGGGTACTAAGATTTATATATTGACAAGATTTTGTAAGGATGATTATGAAAGAAGTGTTTTTTATGATGGTTCTACATTTAAGTGTTCGTGTAAGAGGTTTGAGTCCCGCGGCATCCCGTGTTCACATATTTTTTATGTAATGAAGGAAGAACACGTTGATCGTATTCCAGACAATTTGGTTTTGTCGCGATGGACCAAGGATGCAAAAATTCAGTATTTGAACATCAGCAATTGTAATGATAATGTTGATTCGAATACGATTGCGGAAGCTCGTTTTGGTTCATATTGTACGGTTTTAACAGATTTTTGCAGAGAAGCTTCAAAAAAGGATGGTGTTTACGCGCAAATAATGGAAGACCTTATGCAGCTGAAAATAAAGTACTGCAGTAATGATGATGCAGCAGTTGGTACACAAAAGTCAGCAGTAGGTGATCTAGTTATGGGTACACAACAAACGTCAGAACAAGCTCCAGAACCAAATGTTGACATGTACTCGATATCGATTTCAGATTCTGTAAGCCAAATTGCTGAGAAAAAGAAAAGGAAAGCAAGTTGCAATGGTCAAAAAAGTGTGCAAAACAAATCTCTGTATGATCCGACAAGATACCGCGGCGCTAATGTGATGACAACTACACAAGTGGAAGTTCCAACCACAAGCATAAGTATGAATCAACAAATGTTTCCAATGCAGTCTATGATGCCTATGATACATCCGATGATGCAGCAAATGCACATGCAACCCATGTACCCAATATATGGAATGCAATCTGGAATGCAAACTGGTTTGCTACAGCAAGTTATAAGATCTTCTAAGAATAATTGA 2490 0.3827 METYDESVDADSIHSSERDSWDDELDDDGSYSVSSADKSSTDGNNDADEVGGDIKVRFDTVTAEEIRCMEFATVSEAYDFYYRYGKYNGFAVRKSDSRVTGSGDNKVIKMKQFVCNKHGVREKRHLVRTDRKLEHRRLTRTQCGARLRVNYKAEKDRYVVTAFEETHNHELTPARFVHLHPVYRKISETDKAQVDGLQKRGIRTCHIMGYMVAQKGGYAGVGFTKKDLYNYFDKKMRAVIKDGDVAASLNYLNMKSSTDPMLYAEYAIDNINGRMNTLFWADGISRTDYFCFGDVLAFDTTYSKNKYNYPLVIFSGCNHHSQTVIFGAALVSNETTETYKWVLRCFLECMEGKQPKAVVTDGDGAMREAIKQIFPDANHRLCAWHLNKNAGENVKNGNNFLDGFSKAMYSNFTIDEFEEYWSHMIKENGVQGHPWVVKTYENRSLWATAYLRDNFFGRIRTTSQCEAVNAIIKSYVRKKGCIFEFMNNFDQALRDYRNNELVADFKSSSTDPVLSTQLPVIESHAGKIYTAAVFKEVRHEILKAGELIVRDKSEVGGTKIYILTRFCKDDYERSVFYDGSTFKCSCKRFESRGIPCSHIFYVMKEEHVDRIPDNLVLSRWTKDAKIQYLNISNCNDNVDSNTIAEARFGSYCTVLTDFCREASKKDGVYAQIMEDLMQLKIKYCSNDDAAVGTQKSAVGDLVMGTQQTSEQAPEPNVDMYSISISDSVSQIAEKKKRKASCNGQKSVQNKSLYDPTRYRGANVMTTTQVEVPTTSISMNQQMFPMQSMMPMIHPMMQQMHMQPMYPIYGMQSGMQTGLLQQVIRSSKNN* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4063 829 Pfam FAR1 DNA-binding domain 79 172 IPR004330 -
Tpr4g4063 829 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 37 757 IPR031052 GO:0006355
Tpr4g4063 829 SMART 26again6 582 609 IPR006564 GO:0008270
Tpr4g4063 829 MobiDBLite consensus disorder prediction 1 48 - -
Tpr4g4063 829 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 37 757 - -
Tpr4g4063 829 ProSiteProfiles Zinc finger SWIM-type profile. 571 607 IPR007527 GO:0008270
Tpr4g4063 829 Pfam MULE transposase domain 295 389 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4063 Tpr-Chr4 47411426 47414206 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr4g4063 MULE 5.9e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4063 - - ccaj:109792835 799.275