Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4050 ATGGTGGGGGTTGATGAAAAGAAAAGGAATCAGATGGCTACACAATATGATGATGGAGGAGTGACCGTAGCATTTCATGGGAGAGAGGTGTATGAGGGTGTTCCTATATCTCATTTTTCCAAAAAGTCACCTTTAAACGATAAACAGAACAAGGCGGCTGAGAATAAATACAACTCAAATAAAGTGACGACTGATGGAACACTTTCTCGCGGTGAGGCCATATCATCTGCTGTGATTCAAGCTGAAGGACTCAAATCGAACTTGAAACCCGAATTCCCTAGTTTTGTGAAGTCTTTGGTCAGATCACATGTAGCTAGTTGTTTTTGGATGGGGTTGCCTGTGGCATTTTGTAAAAGACACTTACCTGATAAGGATACAACTATCACTTTGGAAGATGAATCTGGTAGAGAATACAAAACAAAATATATAGCATGTAAGACAGGATTAAGTGCTGGTTGGAGACAATTTTCTGCTGTGCATAAATTGCTAGAGGGTGATGTGGTTGTCTTCCAATTAGTTGAACCCACCAAATTTAAGGTTTACATAATAAGAGCTGGTAATTCAAAAGAGGTAGATGGAGCCTTTATGAATTTAGACAGTTGCACAAAACAAAAAGTTGGAGGTAAAAATATCATAGACACTGATGTAGCATGTAATAGTCCAAAAAGAAAAAATGGTAAACACGTTCCACAAGACATGCAAAAGAAAAAGAAAATTGTTGCACCAAAAATGGAGACCAAGACTAAACAATTTACAGAACAATTTGAAAACGATAGCGATGAAGCATTCTCTGAAATATTCGAGGGATTTAAAATGCCTGAATTTAAAGATGTAAAAGGCTTTCAAAATTTCAGCATCATAGTAGATGGGATGCCAATCGACGATGAACTCTCTACCGAAGTTCGAAACAAGTACTACAAATTATGTTACAGTCAACAAGCTTTTCTTCATGAAAATCTAATAAGAGGATTGAACTATATGCTAATTGTTGGAATCATATCTGAAATTGTTAACATTGCTGATGCAATAAAAGTCAGTGTGATATCTACGCCGCGTTTTGAGTTTTCTAATTGGGATAAAGCTTTGCACGCATTTGAGAAATTGGGTATGAATGTTGAATTCTTACGAGTTCGATTACGTAGGCTTGTAAGCATTGCTTACGAAATGGACAATGCCCCGGAGACAAGAAGATATTTGGCGTATAGAACAGAAGATCACAGTCGAGCAGAGAATGAAATTAAGAATATGGAAATTAAGCTTGAAGAATTGAAGGAAGCATGTAGTGGCTTTGGTGATTATCTTGAGAGTTTGAAACACAAAGCCGAAAGGTATGAACATAAGTTTCAGCAAGAAGTTGCTGCTAGTTGGTAA 1371 0.3705 MVGVDEKKRNQMATQYDDGGVTVAFHGREVYEGVPISHFSKKSPLNDKQNKAAENKYNSNKVTTDGTLSRGEAISSAVIQAEGLKSNLKPEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDTTITLEDESGREYKTKYIACKTGLSAGWRQFSAVHKLLEGDVVVFQLVEPTKFKVYIIRAGNSKEVDGAFMNLDSCTKQKVGGKNIIDTDVACNSPKRKNGKHVPQDMQKKKKIVAPKMETKTKQFTEQFENDSDEAFSEIFEGFKMPEFKDVKGFQNFSIIVDGMPIDDELSTEVRNKYYKLCYSQQAFLHENLIRGLNYMLIVGIISEIVNIADAIKVSVISTPRFEFSNWDKALHAFEKLGMNVEFLRVRLRRLVSIAYEMDNAPETRRYLAYRTEDHSRAENEIKNMEIKLEELKEACSGFGDYLESLKHKAERYEHKFQQEVAASW* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4050 456 SMART B3_2 95 186 IPR003340 GO:0003677
Tpr4g4050 456 Gene3D - 76 187 IPR015300 -
Tpr4g4050 456 CDD B3_DNA 93 184 IPR003340 GO:0003677
Tpr4g4050 456 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 59 392 IPR044837 -
Tpr4g4050 456 ProSiteProfiles B3 DNA-binding domain profile. 95 186 IPR003340 GO:0003677
Tpr4g4050 456 SUPERFAMILY DNA-binding pseudobarrel domain 88 185 IPR015300 -
Tpr4g4050 456 Coils Coil 434 454 - -
Tpr4g4050 456 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 59 392 - -
Tpr4g4050 456 Coils Coil 406 426 - -
Tpr4g4050 456 Pfam B3 DNA binding domain 95 185 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4050 Tpr-Chr4 47196674 47200257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4050 70 190 B3 DNA Binding Superfamily AT5G42700 52.066 8.12e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr4g4050 B3 4.2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4050 - - gmx:100819237 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4050 4 47196674 47200257 Tpr4g4050 4 47196674 47200257 ECH