Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4048 ATGGATGTTCCTATTTGGAATGATAACATTGTTGCAACACCACTATTGCCAAATAAAGAAGAAGAAAACTCTATCATAGTATCTACTCTCGTTAACGTTCTTTCCTCGTCCAACTCCAACAACAATGTTGTTGTTCCAGTTCCAGTTCCTGTTCCTGTTCATGATAAAGAAGCAGCCACGTCATCATATACAAGTGGGTCCCTTTCTCTCTTGTCTTACGAGAATCTTTACGATGTTAACACGTGTAATGCATGTAAAATCAACGGTTGTCTAGGTTGCAGATTATTTATTGAAAAGGATAAAGAAAGTGAAAAGAAGAAAAAGAAATACAGAGGAGTGAGACAGAGAGCATGGGGAAAATGGGTGGCTGAGATTAGAGACCCAAAAAGAGCAACACGTGTATGGCTAGGAACATTTCAAACTGCTGAGAATGCTGCAAGAGCTTATGATCAAGCGGCTATTAAGTATCATGGAGTTAGAGCTAAACTCAATTTTGATTTCTCTGATTATAATGATTTAGTTGCTACTCTTGATGATGAGAAGAAGAAGAAGCTAGGTGCAAATGTTGAAGAAAGAAAAACTAACATAATATCTTTTGGGTCTACAAGTGAACAAGACTAG 621 0.3736 MDVPIWNDNIVATPLLPNKEEENSIIVSTLVNVLSSSNSNNNVVVPVPVPVPVHDKEAATSSYTSGSLSLLSYENLYDVNTCNACKINGCLGCRLFIEKDKESEKKKKKYRGVRQRAWGKWVAEIRDPKRATRVWLGTFQTAENAARAYDQAAIKYHGVRAKLNFDFSDYNDLVATLDDEKKKKLGANVEERKTNIISFGSTSEQD* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4048 206 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Tpr4g4048 206 SUPERFAMILY DNA-binding domain 109 167 IPR016177 GO:0003677
Tpr4g4048 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 18 190 - -
Tpr4g4048 206 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Tpr4g4048 206 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 190 - -
Tpr4g4048 206 CDD AP2 110 166 IPR001471 GO:0003700|GO:0006355
Tpr4g4048 206 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700|GO:0006355
Tpr4g4048 206 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Tpr4g4048 206 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Tpr4g4048 206 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4048 Tpr-Chr4 47172306 47172926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4048 20 176 AP2-EREBP Transcription Factor Family AT4G34410 40.933 3.17e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g4048 AP2 3.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4048 - - cam:101497463 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4048 4 47172306 47172926 Tpr4g4048 4 47172306 47172926 ECH