Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4046 ATGTCGCAACGGTCGGCGCCGGCGCCGTTTTTGAGCAAGACATATGAGATGGTGGATGATCCTCTCACTGATGATGTGATTTCTTGGAGTGAAAATGGTAACACTTTTGTTGTGTTGAAACATGCTGAATTTGCTAGGGATTTGCTTCCAAAGTATTTTAAGCACAACAATTTCTCAAGCTTTGTTCGCCAACTCAACACCTATGGGTTTCGAAAAATTGTTCCTGACAAATGGGAATTCGCCAACGAGAATTTCAAGCGAGGACAAAGGGAGCTATTGGCAACAATCAAGCGCCGGAAGACCCTATCACCGATGATTGGAAGACCCATTGGCGTCGGACTGAACTCAACGTCAAACTCTGGTGGCGAAGACTTGGGTTCAACTTCAACTGGATCGGTGGAACGAAATACCTATTTCGCTGACCTATCAAGCGAGAACGAGAAACTAAAAAAGGACAACGAGAAATTGAGCGTTGAATTGGCACTTGCGAAGAAGCAGTGCGACGAGTTGGTAGCTTTTCTTCAAAATGTTACTAATGTATCGCCCGACCAAATTAACCGCATCATTCGGCAAGGAACAAGTGGGTCCAGCCTTGATGGGGTGCATTTCTATGAAGACTTGAATGCGGCACCGGTAGGTGAAGGTAAATGTGAGGGTTTGAAACTATTTGGTGTTAAGATTGACATGGCTAATGCTAAGGGTGATTGTCGCAAGAGAGGGCATGAAGACTCAATTGGTAGTGCCAACAAGAAGTTGAAAACTGTTGTTTAG 771 0.4475 MSQRSAPAPFLSKTYEMVDDPLTDDVISWSENGNTFVVLKHAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQRELLATIKRRKTLSPMIGRPIGVGLNSTSNSGGEDLGSTSTGSVERNTYFADLSSENEKLKKDNEKLSVELALAKKQCDELVAFLQNVTNVSPDQINRIIRQGTSGSSLDGVHFYEDLNAAPVGEGKCEGLKLFGVKIDMANAKGDCRKRGHEDSIGSANKKLKTVV* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4046 256 Gene3D - 2 101 IPR036388 -
Tpr4g4046 256 Coils Coil 139 166 - -
Tpr4g4046 256 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 254 - -
Tpr4g4046 256 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Tpr4g4046 256 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr4g4046 256 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr4g4046 256 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr4g4046 256 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr4g4046 256 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr4g4046 256 Gene3D - 132 178 - -
Tpr4g4046 256 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 254 IPR027725 -
Tpr4g4046 256 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4046 Tpr-Chr4 47163352 47168473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4046 2 192 HSF AT4G36990 59.406 9.24e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tpr4g4046 HSF_DNA-bind 1.3e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4046 K09419 - gmx:100801638 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0856 2 10488622 10491255 Tpr4g4046 4 47163352 47168473 PCT