Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4041 ATGGAGGAACGAAAGCTTGTGGTTTTGGGTATTCCATGGGACGTTGATACTGATGGCTTGAAAGAATATATGAGCAAATTTGGTGAGCTAGAAGATTGTATTGTTATGAAGGAACGGTCAACTGGCCGGTCGCGCGGTTTTGGATATGTTACATTTGCATCATTGGATGATGCTAAGAGTGTGCTATCTAGTGAACACAGTCTTGGCAACAGGACGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCAGTCAAAAAGGTTACCAGAATCTTTGTGGCCAGGATTGCACCATCAGTAACAGAAGAAACTTTTAGGAGTCATTTTGAGAAATATGGTGAAATAACCGATTTATACATGCCAAAGGATCGAGGATCAAAAACACATCGCGGAATTGGTTTTATAACTTTTGCAAGTGCAGATTCTGTAGAGAACTTGATGAAAGAAACCCATGAACTGGGAGGTTCTGATGTGGTGGTTGATCGAGCAACACCTAAGGAAGATGATTTCAAGCCAATTGGCAGAACCAGAACGACACAAGGAGGATATGGTGCATATAATCCATATAGTTCTGCACCAACTAGATATGCAGCACTTGGTGCTCCAACTATGTATGATCATCCTGGTTCAATTTATGGAAGGTCAGAACCTGTTCGTGGAATGAGCAAAAAGATTTTTGTTGGTCGTCTTCCCCCGGAGGCAACCACTGAGGATCTTCGCCTGTATTTTGGCAGATTTGGCCATATAATAGATGCTTATATACCTAGGGATGTCAAGAGATCTGGTCATAGAGGTTTTGGTTTTGTGACTTTTGCGGACGAGGGTGTTGCAGATCGTGTCTCTCGGAGATCTCATGAAATTTGTGGACATCAGGTTGCCATAGATTCAGCCGCCCCTCTTGATGAGGCAGGGCCCAGTGGGAACACTATGTTGAATAGCATGGATACTCTCAGGGGATATGGCGGACCTGTGAGGCCTTATTTTGATCAAAGTCCTGTGAGGCCACCTTATGGGAGAATGTACGATAACCTGGACTTCGATGATTGGAGTTATGGAGTTGCTAGTAGAAGACCATCAAGAGCAGATTGGAGATATAGACCATATTAG 1116 0.4409 MEERKLVVLGIPWDVDTDGLKEYMSKFGELEDCIVMKERSTGRSRGFGYVTFASLDDAKSVLSSEHSLGNRTLEVKVATPKEEMRAPVKKVTRIFVARIAPSVTEETFRSHFEKYGEITDLYMPKDRGSKTHRGIGFITFASADSVENLMKETHELGGSDVVVDRATPKEDDFKPIGRTRTTQGGYGAYNPYSSAPTRYAALGAPTMYDHPGSIYGRSEPVRGMSKKIFVGRLPPEATTEDLRLYFGRFGHIIDAYIPRDVKRSGHRGFGFVTFADEGVADRVSRRSHEICGHQVAIDSAAPLDEAGPSGNTMLNSMDTLRGYGGPVRPYFDQSPVRPPYGRMYDNLDFDDWSYGVASRRPSRADWRYRPY* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4041 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Tpr4g4041 371 SUPERFAMILY RNA-binding domain, RBD 89 193 IPR035979 GO:0003676
Tpr4g4041 371 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 371 - -
Tpr4g4041 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 153 IPR000504 GO:0003723
Tpr4g4041 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Tpr4g4041 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 283 IPR000504 GO:0003723
Tpr4g4041 371 Gene3D - 223 306 IPR012677 -
Tpr4g4041 371 PANTHER OS01G0945800 PROTEIN 3 371 - -
Tpr4g4041 371 SMART rrm1_1 5 76 IPR000504 GO:0003723
Tpr4g4041 371 SMART rrm1_1 93 164 IPR000504 GO:0003723
Tpr4g4041 371 SMART rrm1_1 227 298 IPR000504 GO:0003723
Tpr4g4041 371 Gene3D - 84 198 IPR012677 -
Tpr4g4041 371 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Tpr4g4041 371 Gene3D - 1 83 IPR012677 -
Tpr4g4041 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 302 IPR000504 GO:0003723
Tpr4g4041 371 SUPERFAMILY RNA-binding domain, RBD 225 324 IPR035979 GO:0003676
Tpr4g4041 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4041 Tpr-Chr4 47094180 47099337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4041 6 276 Eukaryotic Initiation Factors Gene Family AT3G16380 23.381 1.30e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4041 K14411 - gmx:100795240 616.69