Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4040 ATGGATGTAGACATAGTGAAAACTTCTAGTGATGGTAGCATGGACATGATATCAATGATGATGCAAATGGAAAAGTTTCCTGATCAATTCTCTGAACCTTTTTACAACATTCCCACTACTTACCAAGAAATCATCACCACCAACAATAACACTGTTCCATTATTTAACCAAAATGCACTATCATCTCATTCTCCACAAACTTTGAATAATATTGATCAAAATCTACACTCCAATGTCAACTTCCAACAACATTTGAATATCTCACCATCAACTCTTCAAACCAACTCTTCATCATTTCCTTACTCGAACTACTCGAATTCTTCTGATAAGAAGAATTCGATGGCAGCGATGAGGGAAATGATATTTAGGATAGCCGTGATGCAACCTATACATATTGATCCGGAATCAATTAGGCCACCGAAGAGAAGGAATGTGAAGATATCGAAGGATCCACAAAGCGTAGCAGCGCGACATAGAAGGGAAAGGATAAGTGAGAAGATAAGGATATTGCAAAGATTAGTACCTGGTGGAACAAAAATGGACACTGCTTCTATGTTAGATGAAGCTATACATTATGTGAAGTTTTTGAAGAAACAAGTTCAAACATTGGAACAAGTAGGTGCTAATAATAGATCATCACAATTGTCACATAACATTGGTGGTGGTGTTATGAACAATTTTAATGTGAATTATTCTAGTTTGATGATGAAGGGTTGTCAACCTTTTCAAATGGTGGGGTCTACTTCTAAACAATTGCTTAGCTAG 765 0.3634 MDVDIVKTSSDGSMDMISMMMQMEKFPDQFSEPFYNIPTTYQEIITTNNNTVPLFNQNALSSHSPQTLNNIDQNLHSNVNFQQHLNISPSTLQTNSSSFPYSNYSNSSDKKNSMAAMREMIFRIAVMQPIHIDPESIRPPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGANNRSSQLSHNIGGGVMNNFNVNYSSLMMKGCQPFQMVGSTSKQLLS* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4040 254 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 248 IPR045843 GO:0003700|GO:0006355
Tpr4g4040 254 PANTHER TRANSCRIPTION FACTOR HEC2 1 248 - -
Tpr4g4040 254 CDD bHLH_AtIND_like 148 204 - -
Tpr4g4040 254 Gene3D - 146 218 IPR036638 GO:0046983
Tpr4g4040 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Tpr4g4040 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 206 IPR036638 GO:0046983
Tpr4g4040 254 Pfam Helix-loop-helix DNA-binding domain 157 196 IPR011598 GO:0046983
Tpr4g4040 254 SMART finulus 153 202 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4040 Tpr-Chr4 47084120 47084986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4040 10 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 56.422 3.85e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g4040 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4040 - - gmx:100800816 275.018