Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4039 ATGACTAGAAAGAAGGTGAAACTTGCTTTCATAGTCAATGATACTGCTAGAAAAGCATCATATAACAAAAGGAAAATGGGTTTTTTGAAGAAGGTTGAAGAATTAAGCATTCTCTGTGGAATTGATGCATGTGCCATAGTATATGGTCCTTACGAGCCACAACCAGATATTTGGCCATCCCCTTTGGGGGTACAAAATGTGGTCTTCAAATTCAGATCAATGACTGAATTGGAGCATAACAAGAAGAAATTCAATCAAGAGGATTACTTGAAGCAAAGAGTTTCGAAGGCCCGAGATCAACTTATGAAACTGAAGAGAGCTAATATGGAGAACGAGATGAAATTGTTCATGTATAAATCTCTTCAAGAAAATGAAATCATGTTCCAAAATTTATCAATGGAGGAATTAAATGTTCTTTTTTGGTTGATTGACCAAAATTTAAAGGACATTGGTGTAAGAATATTGGAAGCAAGTCAAATCATATCTGCTCCAAGTCCAGGCCAACTTCAAATGGCACCACCACCGCAGCTGGCGGCACCAACAACAACAAGGATGGATCATGGTGGTCAAACTGGGATGACACTGAATGATGCTGATATCATTCAACGGCAGCTGGATATGGACTTGATGCTGAATGGAAATCTTCATGATGAAAATGGGCCTAATATGCTTCCTTGA 678 0.385 MTRKKVKLAFIVNDTARKASYNKRKMGFLKKVEELSILCGIDACAIVYGPYEPQPDIWPSPLGVQNVVFKFRSMTELEHNKKKFNQEDYLKQRVSKARDQLMKLKRANMENEMKLFMYKSLQENEIMFQNLSMEELNVLFWLIDQNLKDIGVRILEASQIISAPSPGQLQMAPPPQLAAPTTTRMDHGGQTGMTLNDADIIQRQLDMDLMLNGNLHDENGPNMLP* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4039 225 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr4g4039 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 187 - -
Tpr4g4039 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr4g4039 225 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Tpr4g4039 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr4g4039 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr4g4039 225 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Tpr4g4039 225 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 187 - -
Tpr4g4039 225 Coils Coil 94 114 - -
Tpr4g4039 225 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Tpr4g4039 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4039 Tpr-Chr4 47070318 47071017 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4039 1 193 Type I MADS-box Gene Family AT5G48670 44.335 1.31e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr4g4039 SRF-TF 8.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4039 - - gmx:100816084 208.379