Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4038 ATGGATTGGGTACGAGGAGAAACAATTGGTAGAGGAAGCTTTGCAACTGTTAATTTAGCTATACCCAAAGGAAAATCAAATTCAAATTCCACTCTTTTTTCTTCTCCGACAGCCGTCAAAACCTCCGAGGTATCAACTTCGTATTCACTAAAAAACGAGAAACAAATTCTTGATTGTCTAGGTTCACATCAACGAATCATTCGTTGTTTCGGAGATGATCATACATTTGAGAATGGTGAAAAGTATTACAATTTATTCCTCGAATACGCTTCCGCCGGAACACTCGCCGATCATGTGAAATTCCACGGTGGCCGGATTGATGACAAAGATGTTCGCCGTTACACGAGGTCAATTGTTGAGGGTTTGAGTCATATTCATAGCAATGGGTTTGTTCATTGTGATATAAAGCTTCAAAACATTCTTGTTTTCCACGATGGTGAAATTAAAATTGCTGATTTTGGTCTTGCCAAGAAAACAGGGGAGGAACAGAGTGAAAAACAGAGGTTTGAATGCAAGGGAACTCCGCTGTGTATGTCACCAGAATTAGTGCACGGCGGTGAGAATGAGTCGCCGGCGGATATTTGGGCACTTGGGTGTGCGGTGGTGGAAATGGTAACAGGAAAACCAGCGTGGAATTTGGAGAAAGACTCGAATATGTGGTCGTTGTTGCTTCGAATTGGTGCCGGAGAAGAATCGCCGGTGATGCCTGAAGAGTTATCGAAAGAGGGAAAAGATTTTGTCCAAAAGTGTTTTGTGAATGATCCAAGAAAGAGATGGACGGCTGAGATGCTTTTGAATCATCCTTTTATTGAAGAAGTGAAGACTGTTAATGAATCATCACCAAGAAATCACTTTGATTTCAATGATTGGGTTTCTAATGTTAGTGATTCGGTTCCGAATTCACCGGAATCTGAAGAGTTTTGTCAATGGGATGTTGATTCTAGTTTTTGTTCGGCAGTGGATCGGCTCCGGCGGCTTGCGACAGTTGAAGGGCCGGTGAATTGGTCGGAATCAAATAGTTGGATTAGTGTTAGGTGA 1038 0.422 MDWVRGETIGRGSFATVNLAIPKGKSNSNSTLFSSPTAVKTSEVSTSYSLKNEKQILDCLGSHQRIIRCFGDDHTFENGEKYYNLFLEYASAGTLADHVKFHGGRIDDKDVRRYTRSIVEGLSHIHSNGFVHCDIKLQNILVFHDGEIKIADFGLAKKTGEEQSEKQRFECKGTPLCMSPELVHGGENESPADIWALGCAVVEMVTGKPAWNLEKDSNMWSLLLRIGAGEESPVMPEELSKEGKDFVQKCFVNDPRKRWTAEMLLNHPFIEEVKTVNESSPRNHFDFNDWVSNVSDSVPNSPESEEFCQWDVDSSFCSAVDRLRRLATVEGPVNWSESNSWISVR* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4038 345 SUPERFAMILY Protein kinase-like (PK-like) 3 301 IPR011009 -
Tpr4g4038 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Tpr4g4038 345 ProSitePatterns Protein kinases ATP-binding region signature. 9 40 IPR017441 GO:0005524
Tpr4g4038 345 SMART serkin_6 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4038 345 CDD STKc_MAPKKK 2 270 - -
Tpr4g4038 345 Gene3D Transferase(Phosphotransferase) domain 1 2 314 - -
Tpr4g4038 345 Pfam Protein kinase domain 5 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4038 345 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4038 345 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 327 - -
Tpr4g4038 345 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4038 Tpr-Chr4 47040902 47042265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4038 1 345 MAP Kinase Kinase Kinase AT4G36950 52.247 2.15e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Tpr4g4038 Pkinase 5.4e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4038 - - aprc:113858661 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0841 2 10310051 10311001 Tpr4g4038 4 47040902 47042265 PCT