Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4031 ATGAATTTCCTCCCTTTCTCTAGCCCTTCAGATATAACTCAAAATATTGGTGAAATTTCTTCACAACAACCAACAAATCACAATGCACACAATTTTCAAAGAAACAATATTAATCAAGGAAATGTCATATTTGCCCCTCAAGCCATAAGGGGAGCCTTCTATCTTAGGAGTCTTCTCAATTATCATGAACAAAACACTTTTAATTTTGGTGTTAATCAACTTAATGGTCTTCATGAATGGGTGCCTCAGATCAATATGAATCAACAAGAATATAATCATAGTACTCGAATCGTTAATTTACCTTATGCTTCATTGGATAGAAGTTCCATATCGGAGAACCAATATAGTTCTAGTTCAACAACTAATGCAATTCAAGTTGGTGAAAATGATGAGCAACAACGTTCCCATATTATATCAACTCGTGATTCTGAATTAATGAGACCAATGATGCAGATTGAGTTGCAAAGGAGACATATTCGAACTAAAAAATGGCTTACAGAGGACGAAATAATAAAGTGTATAAGTTGTGGAAACTTTGAAGCCACGGTCGAAGGAACATCGAAAAATAAAGAATTGTGTTGCATTTGTCAGGAGGAATATCTAACAGGTGAAGAAATTGGAAAGTTAGATTGTGCACATATTTTTCACATGAATTGCATCAAGCAATGA 669 0.3423 MNFLPFSSPSDITQNIGEISSQQPTNHNAHNFQRNNINQGNVIFAPQAIRGAFYLRSLLNYHEQNTFNFGVNQLNGLHEWVPQINMNQQEYNHSTRIVNLPYASLDRSSISENQYSSSSTTNAIQVGENDEQQRSHIISTRDSELMRPMMQIELQRRHIRTKKWLTEDEIIKCISCGNFEATVEGTSKNKELCCICQEEYLTGEEIGKLDCAHIFHMNCIKQ* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4031 222 SUPERFAMILY RING/U-box 192 222 - -
Tpr4g4031 222 Pfam RING-like zinc finger 193 220 IPR001841 -
Tpr4g4031 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE 165 222 - -
Tpr4g4031 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 222 IPR013083 -
Tpr4g4031 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 165 222 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4031 Tpr-Chr4 46954805 46957148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4031 152 222 C3H Transcription Factor Family AT2G15530 38.667 3.65e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4031 - - lang:109350901 75.8701